Factsheet for GSMUA_Achr5P17710_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G40810.1	GSMUA_AchrUn_...	ATMG00960.1	18644794

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, mitochondrion, plastid	10.2	65.79
Bra025544.1-P	Field mustard	cytosol	20.82	62.2
Solyc02g093900.2.1	Tomato	nucleus, plastid	51.84	47.21
GSMUA_Achr7P05470_001	Banana	mitochondrion	51.84	41.1
KRG94326	Soybean	mitochondrion	51.43	41.04
KRG94438	Soybean	mitochondrion	51.43	41.04
GSMUA_Achr1P18150_001	Banana	mitochondrion	51.43	41.04
GSMUA_Achr1P09720_001	Banana	mitochondrion	51.02	40.98
PGSC0003DMT400052104	Potato	mitochondrion	51.84	40.97
Bra032991.1-P	Field mustard	mitochondrion	51.02	40.72
Bra039089.1-P	Field mustard	mitochondrion	51.02	40.72
CDY13693	Canola	mitochondrion	51.02	40.72
CDY28482	Canola	mitochondrion	51.02	40.72
CDY34168	Canola	mitochondrion	51.02	40.72
Solyc06g067920.2.1	Tomato	endoplasmic reticulum, nucleus, unclear	53.06	40.62
PGSC0003DMT400073387	Potato	mitochondrion	53.06	40.62
KRH57638	Soybean	mitochondrion	51.02	40.58
KRH07017	Soybean	mitochondrion	50.61	40.39
AT5G40810.1	Thale cress	mitochondrion	50.61	40.39
AT3G27240.1	Thale cress	mitochondrion	50.61	40.39
PGSC0003DMT400073726	Potato	mitochondrion	52.65	39.81
Solyc12g042920.1.1	Tomato	nucleus	52.65	39.81
VIT_09s0002g05950.t01	Wine grape	endoplasmic reticulum, golgi	51.02	39.56
VIT_14s0171g00330.t01	Wine grape	mitochondrion	49.8	39.35
CDY20058	Canola	plastid	51.02	34.34
CDY36384	Canola	plastid	28.57	34.31
Bra025260.1-P	Field mustard	mitochondrion	42.45	34.21
CDX83670	Canola	mitochondrion	50.61	33.33
CDY00164	Canola	endoplasmic reticulum	51.02	32.98
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, vacuole	17.55	31.62
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	13.47	29.2

Protein Annotations

Gene3D:1.10.760.10	Gene3D:1.20.5.100	MapMan:2.4.3.2	InterPro:Cyt_c-like_dom	InterPro:Cyt_c-like_dom_sf	InterPro:Cyt_c1
InterPro:Cyt_c1_TM_anchor_C	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0020037	GO:GO:0022900	GO:GO:0046872
EnsemblPlantsGene:GSMUA_Achr5G17710_001	EnsemblPlants:GSMUA_Achr5P17710_001	EnsemblPlants:GSMUA_Achr5T17710_001	InterPro:IPR009056	InterPro:IPR036909	UniProt:M0SZF0
PFAM:PF02167	PRINTS:PR00603	PFscan:PS51007	PANTHER:PTHR10266	PANTHER:PTHR10266:SF6	SUPFAM:SSF46626
SUPFAM:SSF81496	UniParc:UPI0002964EA9	SEG:seg	:	:	:

Description

Cytochrome c1-1, heme protein, mitochondrial [Source:GMGC_GENE;Acc:GSMUA_Achr5G17710_001]

Coordinates

chr5:+:18434608..18438173

Molecular Weight (calculated)

27999.9 Da

IEP (calculated)

8.731

GRAVY (calculated)

-0.091

Length

245 amino acids

Sequence
(BLAST)

001: MTVYIWHTWA DISRQLEERI RLRIRSTFVR IRRGQQVYQQ SCASCHSFSL FSYRNLVGVV YAEEERKGVT ADIEVVDGPN DDGEAFARPS KLCDPFRRSH
101: QIERAAMTYN SDLSFIKMYC KLDLFITIIF SLLAGSRHPT AGVIGNIREC LHYNPCFSAV TTTPRVLAVT DDPVNATLAP DSLKEKGKDV VTFLSWATEP
201: EMEERRLMGF KWIFVLSLLL LQVACYRRLN GSVLKSRKMA LNCVS

Best Arabidopsis Sequence Match ( AT3G27240.1 )
(BLAST)

001: MVGGGVIQQI LRRKLHSQSL ATPVLSWFSS KKAHEDAGSS GVRALALLGA GVTGLLSFST VASADEAEHG LESPEYPWPH DGILSSYDHA SIRRGHQVYQ
101: QVCASCHSMS LISYRDLVGV AYTEEEAKAM AAEIEVVDGP NDEGEMFTRP GKLSDRFPQP YANESAARFA NGGAYPPDLS LITKARHNGP NYVFALLTGY
201: RDPPAGISIR EGLHYNPYFP GGAIAMPKML NDEAVEYEDG VPATEAQMGK DIVSFLAWAA EPEMEERKLM GFKWIFLLSL ALLQAAYYRR LKWSVLKSRK
301: LVLDVVN

Arabidopsis Description

CYC11Cytochrome c1 1, heme protein, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LK29]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.