Factsheet for PGSC0003DMT400073726

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g042920.1.1	Tomato	nucleus	98.15	98.15
HORVU3Hr1G098650.1	Barley	cytosol, peroxisome, plastid	57.72	93.97
PGSC0003DMT400073387	Potato	mitochondrion	89.51	90.62
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, mitochondrion, plastid	10.49	89.47
PGSC0003DMT400052104	Potato	mitochondrion	80.86	84.52
KXG25408	Sorghum	mitochondrion	76.85	81.91
Os01t0935700-02	Rice	mitochondrion	76.85	81.91
Os05t0301700-01	Rice	mitochondrion	76.23	81.25
Zm00001d049959_P001	Maize	mitochondrion	76.85	81.11
TraesCS7A01G278100.1	Wheat	golgi, unclear	75.62	80.59
TraesCS7B01G175500.1	Wheat	mitochondrion	75.62	80.59
TraesCS7D01G277900.1	Wheat	mitochondrion	75.62	80.59
TraesCS3D01G451000.1	Wheat	mitochondrion	76.23	80.46
VIT_09s0002g05950.t01	Wine grape	endoplasmic reticulum, golgi	78.4	80.38
HORVU7Hr1G058850.1	Barley	mitochondrion	75.31	80.26
TraesCS3A01G458200.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion	75.93	76.64
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, vacuole	28.4	67.65
Zm00001d031967_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	75.62	66.94
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	20.37	58.41
GSMUA_Achr5P17710_001	Banana	cytosol	39.81	52.65

Protein Annotations

Gene3D:1.10.760.10	Gene3D:1.20.5.100	EntrezGene:102605393	MapMan:2.4.3.2	InterPro:Cyt_c-like_dom	InterPro:Cyt_c-like_dom_sf
InterPro:Cyt_c1	InterPro:Cyt_c1_TM_anchor_C	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0020037	GO:GO:0022900
GO:GO:0046872	InterPro:IPR009056	InterPro:IPR036909	UniProt:M1CSJ8	PFAM:PF02167	EnsemblPlantsGene:PGSC0003DMG400028642
PGSC:PGSC0003DMG400028642	EnsemblPlants:PGSC0003DMT400073726	PRINTS:PR00603	PFscan:PS51007	PANTHER:PTHR10266	PANTHER:PTHR10266:SF6
SUPFAM:SSF46626	SUPFAM:SSF81496	UniParc:UPI0002951415	RefSeq:XP_006346588.1	SEG:seg	:

Description

Cytochrome c1-1, heme protein, mitochondrial [Source:PGSC_GENE;Acc:PGSC0003DMG400028642]

Coordinates

chr12:+:49898299..49905147

Molecular Weight (calculated)

35638.3 Da

IEP (calculated)

7.017

GRAVY (calculated)

-0.228

Length

324 amino acids

Sequence
(BLAST)

001: MSFGKKIRIG LDGFGRINRF ITRAAHRDES KLSNASNVLK TSTFKHDSDG FGSAGLKSFR AFAVVGAGVS GLLSFAGVAY SDEAEHGLEC PSYPWPHEGI
101: LSSYDHASIR RGHQVYQQVC ASCHSMSLIS YRDLVGVAYT EEETKAMAAE IEVVDGPNDE GEMFTRPGKL SDRFPQPYAN EAAARFANGG AYPPDLSLIT
201: KARHSGQNYV FALLTGYRDP PAGVSIREGL HYNPYFPGGA IAMPKMLNDG AVEYEDGIPA TEAQMGKDVV SFLSWAAEPE MEERKLMGFK WIFVLSLALL
301: QAAYYRRLRW SVLKSRKLVL DVVN

Best Arabidopsis Sequence Match ( AT5G40810.1 )
(BLAST)

001: MVGGGVIRQL LRRKLHSQSV ATPVLSWLSS KKANEDAGSA GLRAFALMGA GITGLLSFST VASADEAEHG LECPNYPWPH EGILSSYDHA SIRRGHQVYQ
101: QVCASCHSMS LISYRDLVGV AYTEEEAKAM AAEIEVVDGP NDEGEMFTRP GKLSDRLPEP YSNESAARFA NGGAYPPDLS LVTKARHNGQ NYVFALLTGY
201: RDPPAGISIR EGLHYNPYFP GGAIAMPKML NDEAVEYEDG TPATEAQMGK DVVSFLSWAA EPEMEERKLM GFKWIFLLSL ALLQAAYYRR LKWSVLKSRK
301: LVLDVVN

Arabidopsis Description

CYC12Cytochrome c1 2, heme protein, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FKS5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.