Factsheet for PGSC0003DMT400052104

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 9

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g093900.2.1	Tomato	nucleus, plastid	86.45	99.63
HORVU3Hr1G098650.1	Barley	cytosol, peroxisome, plastid	59.03	91.96
Bra025544.1-P	Field mustard	cytosol	24.19	91.46
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, mitochondrion, plastid	10.97	89.47
KRH57638	Soybean	mitochondrion	85.16	85.71
VIT_14s0171g00330.t01	Wine grape	mitochondrion	85.16	85.16
Bra032991.1-P	Field mustard	mitochondrion	84.19	85.02
KRG94326	Soybean	mitochondrion	84.19	85.02
AT3G27240.1	Thale cress	mitochondrion	84.19	85.02
CDY28482	Canola	mitochondrion	83.87	84.69
CDY34168	Canola	mitochondrion	83.87	84.69
Bra039089.1-P	Field mustard	mitochondrion	83.55	84.36
CDY13693	Canola	mitochondrion	83.55	84.36
KRH07017	Soybean	mitochondrion	83.23	84.04
KRG94438	Soybean	mitochondrion	83.23	84.04
AT5G40810.1	Thale cress	mitochondrion	83.23	84.04
Os05t0301700-01	Rice	mitochondrion	81.29	82.89
HORVU7Hr1G058850.1	Barley	mitochondrion	81.29	82.89
Os01t0935700-02	Rice	mitochondrion	80.97	82.57
TraesCS7D01G277900.1	Wheat	mitochondrion	80.65	82.24
TraesCS7B01G175500.1	Wheat	mitochondrion	80.65	82.24
TraesCS7A01G278100.1	Wheat	golgi, unclear	80.65	82.24
KXG25408	Sorghum	mitochondrion	80.65	82.24
PGSC0003DMT400073387	Potato	mitochondrion	84.52	81.88
Zm00001d049959_P001	Maize	mitochondrion	80.65	81.43
PGSC0003DMT400073726	Potato	mitochondrion	84.52	80.86
TraesCS3D01G451000.1	Wheat	mitochondrion	79.68	80.46
TraesCS3A01G458200.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion	79.68	76.95
Bra025260.1-P	Field mustard	mitochondrion	74.52	75.99
CDY20058	Canola	plastid	83.55	71.15
CDX83670	Canola	mitochondrion	83.55	69.62
CDY00164	Canola	endoplasmic reticulum	83.87	68.6
Zm00001d031967_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	80.32	68.03
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, vacuole	29.68	67.65
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	21.94	60.18
CDY36384	Canola	plastid	37.74	57.35
GSMUA_Achr5P17710_001	Banana	cytosol	40.97	51.84

Protein Annotations

Gene3D:1.10.760.10	Gene3D:1.20.5.100	EntrezGene:102598087	MapMan:2.4.3.2	ProteinID:CAA56109	ProteinID:CAA56109.1
InterPro:Cyt_c-like_dom	InterPro:Cyt_c-like_dom_sf	InterPro:Cyt_c1	InterPro:Cyt_c1_TM_anchor_C	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005743	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0020037	GO:GO:0022900	GO:GO:0046872	GO:GO:0055114
GO:GO:0070469	InterPro:IPR009056	InterPro:IPR036909	UniProt:M1BST6	PFAM:PF02167	EnsemblPlantsGene:PGSC0003DMG400020224
PGSC:PGSC0003DMG400020224	EnsemblPlants:PGSC0003DMT400052104	PRINTS:PR00603	PFscan:PS51007	PANTHER:PTHR10266	PANTHER:PTHR10266:SF6
SUPFAM:SSF46626	SUPFAM:SSF81496	UniParc:UPI000296A128	EMBL:X79597	RefSeq:XP_006338675.1	SEG:seg

Description

Cytochrome C1 [Source:PGSC_GENE;Acc:PGSC0003DMG400020224]

Coordinates

chr2:-:47804543..47810113

Molecular Weight (calculated)

34092.7 Da

IEP (calculated)

6.516

GRAVY (calculated)

-0.196

Length

310 amino acids

Sequence
(BLAST)

001: MLGGRAVHRL LGRKFQSEST ASPILSPFVS KKTQEEFGSF GMKSFRTLAL IGAGVSGLLG FATVASADEA EHGLECPSYP WPHAGILSSY DHASIRRGHQ
101: VYQQVCASCH SMSLVSYRDL VGVAYTEEEV KAMAAEIEVE DGPNDEGEMF TRPGKLSDRF PQPYPNEAAA RFANGGAYPP DLSLITKARH NGQNYVFALL
201: TGYRDPPAGV SIREGLHYNP YFPGGAIAMP KMLNDGAVEY EDGVPATEAQ MGKDVVSFLT WAAEPEMEER KLMGFKWIFV LSLALLQAAY YRRLRWSVLK
301: SRKLVLDVVN

Best Arabidopsis Sequence Match ( AT5G40810.1 )
(BLAST)

001: MVGGGVIRQL LRRKLHSQSV ATPVLSWLSS KKANEDAGSA GLRAFALMGA GITGLLSFST VASADEAEHG LECPNYPWPH EGILSSYDHA SIRRGHQVYQ
101: QVCASCHSMS LISYRDLVGV AYTEEEAKAM AAEIEVVDGP NDEGEMFTRP GKLSDRLPEP YSNESAARFA NGGAYPPDLS LVTKARHNGQ NYVFALLTGY
201: RDPPAGISIR EGLHYNPYFP GGAIAMPKML NDEAVEYEDG TPATEAQMGK DVVSFLSWAA EPEMEERKLM GFKWIFLLSL ALLQAAYYRR LKWSVLKSRK
301: LVLDVVN

Arabidopsis Description

CYC12Cytochrome c1 2, heme protein, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FKS5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.