Factsheet for Bra025544.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, mitochondrion, plastid	40.24	86.84
HORVU3Hr1G098650.1	Barley	cytosol, peroxisome, plastid	91.46	37.69
CDY36384	Canola	plastid	90.24	36.27
Solyc02g093900.2.1	Tomato	nucleus, plastid	91.46	27.88
AT5G40810.1	Thale cress	mitochondrion	97.56	26.06
Bra032991.1-P	Field mustard	mitochondrion	96.34	25.73
Bra039089.1-P	Field mustard	mitochondrion	96.34	25.73
KXG25408	Sorghum	mitochondrion	93.9	25.33
KRG94438	Soybean	mitochondrion	93.9	25.08
Zm00001d049959_P001	Maize	mitochondrion	92.68	24.76
KRH07017	Soybean	mitochondrion	92.68	24.76
Os05t0301700-01	Rice	mitochondrion	91.46	24.67
Os01t0935700-02	Rice	mitochondrion	91.46	24.67
HORVU7Hr1G058850.1	Barley	mitochondrion	90.24	24.34
TraesCS7A01G278100.1	Wheat	golgi, unclear	90.24	24.34
TraesCS7B01G175500.1	Wheat	mitochondrion	90.24	24.34
TraesCS7D01G277900.1	Wheat	mitochondrion	90.24	24.34
PGSC0003DMT400052104	Potato	mitochondrion	91.46	24.19
KRG94326	Soybean	mitochondrion	90.24	24.1
TraesCS3D01G451000.1	Wheat	mitochondrion	90.24	24.1
KRH57638	Soybean	mitochondrion	90.24	24.03
TraesCS3A01G458200.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion	90.24	23.05
VIT_14s0171g00330.t01	Wine grape	mitochondrion	86.59	22.9
GSMUA_Achr5P17710_001	Banana	cytosol	62.2	20.82
Zm00001d031967_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	92.68	20.77
Bra025260.1-P	Field mustard	mitochondrion	60.98	16.45
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	8.54	6.19
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, vacuole	0.0	0.0

Protein Annotations

Gene3D:1.10.760.10	Gene3D:1.20.5.100	MapMan:2.4.3.2	EnsemblPlantsGene:Bra025544	EnsemblPlants:Bra025544.1	EnsemblPlants:Bra025544.1-P
InterPro:Cyt_c-like_dom_sf	InterPro:Cyt_c1	InterPro:Cyt_c1_TM_anchor_C	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005750
GO:GO:0005773	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987
GO:GO:0016020	GO:GO:0020037	GO:GO:0022900	InterPro:IPR036909	UniProt:M4E9T8	PFAM:PF02167
PRINTS:PR00603	PANTHER:PTHR10266	PANTHER:PTHR10266:SF6	SUPFAM:SSF46626	SUPFAM:SSF81496	UniParc:UPI0002544EEB
SEG:seg	:	:	:	:	:

Description

AT5G40810 (E=6e-032) | cytochrome c1, putative

Coordinates

chrA04:+:8018052..8018605

Molecular Weight (calculated)

9524.7 Da

IEP (calculated)

6.829

GRAVY (calculated)

-0.062

Length

82 amino acids

Sequence
(BLAST)

1: MPKMLNDEAV EYEDGTPATE AQMGKDVVSF LSWAVEPEME ERKLMGFKWI FLLSLALLQA AYYRRLKWSV LKSRKLVLNV VN

Best Arabidopsis Sequence Match ( AT5G40810.2 )
(BLAST)

001: MGAGITGLLS FSTVASADEA EHGLECPNYP WPHEGILSSY DHASIRRGHQ VYQQVCASCH SMSLISYRDL VGVAYTEEEA KAMAAEIEVV DGPNDEGEMF
101: TRPGKLSDRL PEPYSNESAA RFANGGAYPP DLSLVTKARH NGQNYVFALL TGYRDPPAGI SIREGLHYNP YFPGGAIAMP KMLNDEAVEY EDGTPATEAQ
201: MGKDVVSFLS WAAEPEMEER KLMGFKWIFL LSLALLQAAY YRRLKWSVLK SRKLVLDVVN

Arabidopsis Description

CYC12Cytochrome c1 2, heme protein, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FKS5]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.