Factsheet for Zm00001d049959_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
GRMZM5G867512_P01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G40810.1	GRMZM5G867512_P01	ATMG00960.1	18644794

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG25408	Sorghum	mitochondrion	97.07	98.03
Os05t0301700-01	Rice	mitochondrion	94.79	95.72
TraesCS7D01G277900.1	Wheat	mitochondrion	92.51	93.42
TraesCS7B01G175500.1	Wheat	mitochondrion	92.51	93.42
TraesCS7A01G278100.1	Wheat	golgi, unclear	92.51	93.42
HORVU7Hr1G058850.1	Barley	mitochondrion	91.86	92.76
Bra025544.1-P	Field mustard	cytosol	24.76	92.68
Solyc02g093900.2.1	Tomato	nucleus, plastid	79.15	90.33
CDY34168	Canola	mitochondrion	84.04	84.04
Bra032991.1-P	Field mustard	mitochondrion	84.04	84.04
VIT_14s0171g00330.t01	Wine grape	mitochondrion	84.36	83.55
CDY13693	Canola	mitochondrion	83.39	83.39
CDY28482	Canola	mitochondrion	83.39	83.39
Bra039089.1-P	Field mustard	mitochondrion	83.39	83.39
AT5G40810.1	Thale cress	mitochondrion	83.39	83.39
KRG94438	Soybean	mitochondrion	83.06	83.06
AT3G27240.1	Thale cress	mitochondrion	82.41	82.41
KRH07017	Soybean	mitochondrion	82.41	82.41
GSMUA_Achr1P09720_001	Banana	mitochondrion	81.76	82.3
GSMUA_Achr7P05470_001	Banana	mitochondrion	82.41	81.88
GSMUA_Achr1P18150_001	Banana	mitochondrion	81.76	81.76
KRH57638	Soybean	mitochondrion	81.76	81.49
KRG94326	Soybean	mitochondrion	81.43	81.43
PGSC0003DMT400052104	Potato	mitochondrion	81.43	80.65
PGSC0003DMT400073387	Potato	mitochondrion	82.74	79.38
Solyc06g067920.2.1	Tomato	endoplasmic reticulum, nucleus, unclear	82.74	79.38
VIT_09s0002g05950.t01	Wine grape	endoplasmic reticulum, golgi	80.46	78.16
PGSC0003DMT400073726	Potato	mitochondrion	81.11	76.85
Solyc12g042920.1.1	Tomato	nucleus	81.11	76.85
Zm00001d031967_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	91.21	76.5
Bra025260.1-P	Field mustard	mitochondrion	73.62	74.34
CDY20058	Canola	plastid	83.39	70.33
CDX83670	Canola	mitochondrion	83.06	68.55
CDY00164	Canola	endoplasmic reticulum	82.74	67.02
CDY36384	Canola	plastid	38.76	58.33

Protein Annotations

Gene3D:1.10.760.10	Gene3D:1.20.5.100	EntrezGene:100384742	MapMan:2.4.3.2	UniProt:A0A1D6PZ07	ProteinID:AQK51673.1
InterPro:Cyt_c-like_dom	InterPro:Cyt_c-like_dom_sf	InterPro:Cyt_c1	InterPro:Cyt_c1_TM_anchor_C	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987
GO:GO:0020037	GO:GO:0022900	GO:GO:0046872	InterPro:IPR009056	InterPro:IPR036909	PFAM:PF02167
PRINTS:PR00603	PFscan:PS51007	PANTHER:PTHR10266	PANTHER:PTHR10266:SF6	SUPFAM:SSF46626	SUPFAM:SSF81496
UniParc:UPI0008449E8C	EnsemblPlantsGene:Zm00001d049959	EnsemblPlants:Zm00001d049959_P001	EnsemblPlants:Zm00001d049959_T001	SEG:seg	:

Description

Cytochrome c1 1 heme protein mitochondrial

Coordinates

chr4:-:55908322..55912182

Molecular Weight (calculated)

33605.1 Da

IEP (calculated)

6.424

GRAVY (calculated)

-0.168

Length

307 amino acids

Sequence
(BLAST)

001: MAAARGINQL LKRILHNQSA GPWLLSSFRG NHEESSAGLR ALALLGVGAS GLLSFATIAS ADEAEHGLAA PDYPWPHAGI MSSYDHASIR RGHQVYTQVC
101: ASCHSMSLIS YRDLVGVAYT EEETKAMAAE IEVVDGPNDE GEMFTRPGKL SDRFPQPYAN EQAARFANGG AYPPDLSLIT KVIAARHNGQ NYVFALLTGY
201: RDPPAGVQIR EGLHYNPYFP GGAIAMPKML NDGAVEYEDG TPATEAQMGK DVVSFLSWAA EPEMEERKLM GVKWIFLLSL ALLQAAYYRR MRWSVLKSRK
301: LVLDVVN

Best Arabidopsis Sequence Match ( AT5G40810.1 )
(BLAST)

001: MVGGGVIRQL LRRKLHSQSV ATPVLSWLSS KKANEDAGSA GLRAFALMGA GITGLLSFST VASADEAEHG LECPNYPWPH EGILSSYDHA SIRRGHQVYQ
101: QVCASCHSMS LISYRDLVGV AYTEEEAKAM AAEIEVVDGP NDEGEMFTRP GKLSDRLPEP YSNESAARFA NGGAYPPDLS LVTKARHNGQ NYVFALLTGY
201: RDPPAGISIR EGLHYNPYFP GGAIAMPKML NDEAVEYEDG TPATEAQMGK DVVSFLSWAA EPEMEERKLM GFKWIFLLSL ALLQAAYYRR LKWSVLKSRK
301: LVLDVVN

Arabidopsis Description

CYC12Cytochrome c1 2, heme protein, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FKS5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.