Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 6
- cytosol 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
nucleus:
25464976
unclear: 26455813 nucleus: 28394025 extracellular: 29876421 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID:
29876421
doi
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID:
26455813
doi
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400073726 | Potato | mitochondrion | 98.15 | 98.15 |
Solyc02g093900.2.1 | Tomato | nucleus, plastid | 78.09 | 94.05 |
HORVU3Hr1G098650.1 | Barley | cytosol, peroxisome, plastid | 57.72 | 93.97 |
GSMUA_AchrUn_... | Banana | endoplasmic reticulum, extracellular, mitochondrion, plastid | 10.49 | 89.47 |
Solyc06g067920.2.1 | Tomato | endoplasmic reticulum, nucleus, unclear | 88.27 | 89.38 |
KXG25408 | Sorghum | mitochondrion | 76.85 | 81.91 |
Os05t0301700-01 | Rice | mitochondrion | 76.85 | 81.91 |
Os01t0935700-02 | Rice | mitochondrion | 76.54 | 81.58 |
Zm00001d049959_P001 | Maize | mitochondrion | 76.85 | 81.11 |
TraesCS7A01G278100.1 | Wheat | golgi, unclear | 75.93 | 80.92 |
TraesCS7B01G175500.1 | Wheat | mitochondrion | 75.93 | 80.92 |
TraesCS7D01G277900.1 | Wheat | mitochondrion | 75.93 | 80.92 |
HORVU7Hr1G058850.1 | Barley | mitochondrion | 75.62 | 80.59 |
TraesCS3D01G451000.1 | Wheat | mitochondrion | 76.23 | 80.46 |
VIT_09s0002g05950.t01 | Wine grape | endoplasmic reticulum, golgi | 78.09 | 80.06 |
TraesCS3A01G458200.1 | Wheat | cytosol, endoplasmic reticulum, mitochondrion | 75.93 | 76.64 |
GSMUA_AchrUn_... | Banana | endoplasmic reticulum, extracellular, vacuole | 28.7 | 68.38 |
Zm00001d031967_P001 | Maize | cytosol, endoplasmic reticulum, peroxisome | 75.93 | 67.21 |
GSMUA_AchrUn_... | Banana | cytosol, mitochondrion | 20.68 | 59.29 |
GSMUA_Achr5P17710_001 | Banana | cytosol | 39.81 | 52.65 |
Protein Annotations
Gene3D:1.10.760.10 | Gene3D:1.20.5.100 | MapMan:2.4.3.2 | InterPro:Cyt_c-like_dom | InterPro:Cyt_c-like_dom_sf | InterPro:Cyt_c1 |
InterPro:Cyt_c1_TM_anchor_C | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005750 | GO:GO:0006091 | GO:GO:0006122 |
GO:GO:0006139 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009055 | GO:GO:0009058 |
GO:GO:0009987 | GO:GO:0016020 | GO:GO:0020037 | GO:GO:0042776 | GO:GO:0045153 | GO:GO:0045155 |
GO:GO:0046872 | InterPro:IPR009056 | InterPro:IPR036909 | UniProt:K4DF81 | PFAM:PF02167 | PRINTS:PR00603 |
PFscan:PS51007 | PANTHER:PTHR10266 | PANTHER:PTHR10266:SF6 | SUPFAM:SSF46626 | SUPFAM:SSF81496 | EnsemblPlantsGene:Solyc12g042920.1 |
EnsemblPlants:Solyc12g042920.1.1 | UniParc:UPI0002769436 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr12:-:39504834..39511243
Molecular Weight (calculated)
35689.4 Da
IEP (calculated)
7.017
GRAVY (calculated)
-0.238
Length
324 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFGKKIRIG LDGFGRINRF IARAAHRDEN KLSNASTVLK TSTFKHDSDG FGSAGLKSFR AFAVVGAGIS GLLSFAGVAY SDEAEHGLEC PSYPWPHEGI
101: LSSYDHASIR RGHQVYQQVC ASCHSMSLIS YRDLVGVAYT EEETKAMAAE IEVVDGPNDE GEMFTRPGKL SDRFPQPYPN EAAARFANGG AYPPDLSLIT
201: KARHNGQNYV FALLTGYRDP PAGVSIREGL HYNPYFPGGA IAMPKMLNDG AVEYEDGIPA TEAQMGKDVV SFLSWAAEPE MEERKLMGFK WIFVLSLALL
301: QAAYYRRLRW SVLKSRKLVL DVVN
101: LSSYDHASIR RGHQVYQQVC ASCHSMSLIS YRDLVGVAYT EEETKAMAAE IEVVDGPNDE GEMFTRPGKL SDRFPQPYPN EAAARFANGG AYPPDLSLIT
201: KARHNGQNYV FALLTGYRDP PAGVSIREGL HYNPYFPGGA IAMPKMLNDG AVEYEDGIPA TEAQMGKDVV SFLSWAAEPE MEERKLMGFK WIFVLSLALL
301: QAAYYRRLRW SVLKSRKLVL DVVN
001: MVGGGVIRQL LRRKLHSQSV ATPVLSWLSS KKANEDAGSA GLRAFALMGA GITGLLSFST VASADEAEHG LECPNYPWPH EGILSSYDHA SIRRGHQVYQ
101: QVCASCHSMS LISYRDLVGV AYTEEEAKAM AAEIEVVDGP NDEGEMFTRP GKLSDRLPEP YSNESAARFA NGGAYPPDLS LVTKARHNGQ NYVFALLTGY
201: RDPPAGISIR EGLHYNPYFP GGAIAMPKML NDEAVEYEDG TPATEAQMGK DVVSFLSWAA EPEMEERKLM GFKWIFLLSL ALLQAAYYRR LKWSVLKSRK
301: LVLDVVN
101: QVCASCHSMS LISYRDLVGV AYTEEEAKAM AAEIEVVDGP NDEGEMFTRP GKLSDRLPEP YSNESAARFA NGGAYPPDLS LVTKARHNGQ NYVFALLTGY
201: RDPPAGISIR EGLHYNPYFP GGAIAMPKML NDEAVEYEDG TPATEAQMGK DVVSFLSWAA EPEMEERKLM GFKWIFLLSL ALLQAAYYRR LKWSVLKSRK
301: LVLDVVN
Arabidopsis Description
CYC12Cytochrome c1 2, heme protein, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FKS5]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.