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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 2
  • mitochondrion 6
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:plastid
EpiLoc:mitochondrion
MultiLoc:cytosol
Plant-mPloc:mitochondrion
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:mitochondrion
nucleus: 25464976
unclear: 26455813
nucleus: 28394025
extracellular: 29876421
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 29876421 doi
L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
msms PMID: 25464976 doi
Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400073726 Potato mitochondrion 98.15 98.15
Solyc02g093900.2.1 Tomato nucleus, plastid 78.09 94.05
HORVU3Hr1G098650.1 Barley cytosol, peroxisome, plastid 57.72 93.97
GSMUA_AchrUn_... Banana endoplasmic reticulum, extracellular, mitochondrion, plastid 10.49 89.47
Solyc06g067920.2.1 Tomato endoplasmic reticulum, nucleus, unclear 88.27 89.38
KXG25408 Sorghum mitochondrion 76.85 81.91
Os05t0301700-01 Rice mitochondrion 76.85 81.91
Os01t0935700-02 Rice mitochondrion 76.54 81.58
Zm00001d049959_P001 Maize mitochondrion 76.85 81.11
TraesCS7A01G278100.1 Wheat golgi, unclear 75.93 80.92
TraesCS7B01G175500.1 Wheat mitochondrion 75.93 80.92
TraesCS7D01G277900.1 Wheat mitochondrion 75.93 80.92
HORVU7Hr1G058850.1 Barley mitochondrion 75.62 80.59
TraesCS3D01G451000.1 Wheat mitochondrion 76.23 80.46
VIT_09s0002g05950.t01 Wine grape endoplasmic reticulum, golgi 78.09 80.06
TraesCS3A01G458200.1 Wheat cytosol, endoplasmic reticulum, mitochondrion 75.93 76.64
GSMUA_AchrUn_... Banana endoplasmic reticulum, extracellular, vacuole 28.7 68.38
Zm00001d031967_P001 Maize cytosol, endoplasmic reticulum, peroxisome 75.93 67.21
GSMUA_AchrUn_... Banana cytosol, mitochondrion 20.68 59.29
GSMUA_Achr5P17710_001 Banana cytosol 39.81 52.65
Protein Annotations
Gene3D:1.10.760.10Gene3D:1.20.5.100MapMan:2.4.3.2InterPro:Cyt_c-like_domInterPro:Cyt_c-like_dom_sfInterPro:Cyt_c1
InterPro:Cyt_c1_TM_anchor_CGO:GO:0003674GO:GO:0003824GO:GO:0005488GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0005739GO:GO:0005750GO:GO:0006091GO:GO:0006122
GO:GO:0006139GO:GO:0006810GO:GO:0008150GO:GO:0008152GO:GO:0009055GO:GO:0009058
GO:GO:0009987GO:GO:0016020GO:GO:0020037GO:GO:0042776GO:GO:0045153GO:GO:0045155
GO:GO:0046872InterPro:IPR009056InterPro:IPR036909UniProt:K4DF81PFAM:PF02167PRINTS:PR00603
PFscan:PS51007PANTHER:PTHR10266PANTHER:PTHR10266:SF6SUPFAM:SSF46626SUPFAM:SSF81496EnsemblPlantsGene:Solyc12g042920.1
EnsemblPlants:Solyc12g042920.1.1UniParc:UPI0002769436SEG:seg:::
Description
No Description!
Coordinates
chr12:-:39504834..39511243
Molecular Weight (calculated)
35689.4 Da
IEP (calculated)
7.017
GRAVY (calculated)
-0.238
Length
324 amino acids
Sequence
(BLAST)
001: MSFGKKIRIG LDGFGRINRF IARAAHRDEN KLSNASTVLK TSTFKHDSDG FGSAGLKSFR AFAVVGAGIS GLLSFAGVAY SDEAEHGLEC PSYPWPHEGI
101: LSSYDHASIR RGHQVYQQVC ASCHSMSLIS YRDLVGVAYT EEETKAMAAE IEVVDGPNDE GEMFTRPGKL SDRFPQPYPN EAAARFANGG AYPPDLSLIT
201: KARHNGQNYV FALLTGYRDP PAGVSIREGL HYNPYFPGGA IAMPKMLNDG AVEYEDGIPA TEAQMGKDVV SFLSWAAEPE MEERKLMGFK WIFVLSLALL
301: QAAYYRRLRW SVLKSRKLVL DVVN
Best Arabidopsis Sequence Match ( AT5G40810.1 )
(BLAST)
001: MVGGGVIRQL LRRKLHSQSV ATPVLSWLSS KKANEDAGSA GLRAFALMGA GITGLLSFST VASADEAEHG LECPNYPWPH EGILSSYDHA SIRRGHQVYQ
101: QVCASCHSMS LISYRDLVGV AYTEEEAKAM AAEIEVVDGP NDEGEMFTRP GKLSDRLPEP YSNESAARFA NGGAYPPDLS LVTKARHNGQ NYVFALLTGY
201: RDPPAGISIR EGLHYNPYFP GGAIAMPKML NDEAVEYEDG TPATEAQMGK DVVSFLSWAA EPEMEERKLM GFKWIFLLSL ALLQAAYYRR LKWSVLKSRK
301: LVLDVVN
Arabidopsis Description
CYC12Cytochrome c1 2, heme protein, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FKS5]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.