Factsheet for TraesCS3A01G458200.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, cytosol

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 2
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, mitochondrion
Any Predictor:	cytosol, endoplasmic reticulum, mitochondrion
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1B01G451000.1
TraesCS2A01G239800.1
TraesCS6D01G200900.1
TraesCS6D01G375100.1
TraesCS7D01G238600.1
TraesCS7D01G533300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G40810.1	TraesCS1B01G451000.1	ATMG00960.1	18644794
AT5G40810.1	TraesCS2A01G239800.1	ATMG00960.1	18644794
AT5G40810.1	TraesCS6D01G200900.1	ATMG00960.1	18644794
AT5G40810.1	TraesCS6D01G375100.1	ATMG00960.1	18644794
AT5G40810.1	TraesCS7D01G238600.1	ATMG00960.1	18644794
AT5G40810.1	TraesCS7D01G533300.1	ATMG00960.1	18644794

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G098650.1	Barley	cytosol, peroxisome, plastid	61.37	99.0
TraesCS3D01G451000.1	Wheat	mitochondrion	92.21	96.42
Os01t0935700-02	Rice	mitochondrion	85.98	90.79
Bra025544.1-P	Field mustard	cytosol	23.05	90.24
Solyc02g093900.2.1	Tomato	nucleus, plastid	73.52	87.73
TraesCS7A01G278100.1	Wheat	golgi, unclear	82.55	87.17
GSMUA_Achr1P09720_001	Banana	mitochondrion	78.5	82.62
VIT_14s0171g00330.t01	Wine grape	mitochondrion	79.44	82.26
GSMUA_Achr7P05470_001	Banana	mitochondrion	79.13	82.2
AT5G40810.1	Thale cress	mitochondrion	78.19	81.76
GSMUA_Achr1P18150_001	Banana	mitochondrion	78.19	81.76
CDY34168	Canola	mitochondrion	77.88	81.43
Bra032991.1-P	Field mustard	mitochondrion	77.88	81.43
CDY13693	Canola	mitochondrion	77.57	81.11
Bra039089.1-P	Field mustard	mitochondrion	77.57	81.11
AT3G27240.1	Thale cress	mitochondrion	77.26	80.78
CDY28482	Canola	mitochondrion	77.26	80.78
KRG94438	Soybean	mitochondrion	77.26	80.78
KRG94326	Soybean	mitochondrion	76.95	80.46
KRH07017	Soybean	mitochondrion	76.32	79.8
PGSC0003DMT400052104	Potato	mitochondrion	76.95	79.68
KRH57638	Soybean	mitochondrion	76.32	79.55
PGSC0003DMT400073387	Potato	mitochondrion	77.57	77.81
VIT_09s0002g05950.t01	Wine grape	endoplasmic reticulum, golgi	76.01	77.22
Solyc06g067920.2.1	Tomato	endoplasmic reticulum, nucleus, unclear	76.95	77.19
PGSC0003DMT400073726	Potato	mitochondrion	76.64	75.93
Solyc12g042920.1.1	Tomato	nucleus	76.64	75.93
Bra025260.1-P	Field mustard	mitochondrion	68.22	72.04
CDY20058	Canola	plastid	77.88	68.68
CDX83670	Canola	mitochondrion	77.57	66.94
CDY00164	Canola	endoplasmic reticulum	77.57	65.7
CDY36384	Canola	plastid	36.76	57.84

Protein Annotations

EnsemblPlants:TraesCS3A01G458200.1	EnsemblPlantsGene:TraesCS3A01G458200	Gene3D:1.10.760.10	Gene3D:1.20.5.100	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0009055	GO:GO:0020037	InterPro:Cyt_c-like_dom	InterPro:Cyt_c-like_dom_sf	InterPro:Cyt_c1
InterPro:Cyt_c1_TM_anchor_C	InterPro:IPR009056	InterPro:IPR036909	PANTHER:PTHR10266	PANTHER:PTHR10266:SF6	PFAM:PF02167
PFscan:PS51007	PRINTS:PR00603	SUPFAM:SSF46626	SUPFAM:SSF81496	MapMan:2.4.3.2	:

Description

No Description!

Coordinates

chr3A:+:695510835..695513473

Molecular Weight (calculated)

35419.1 Da

IEP (calculated)

6.044

GRAVY (calculated)

-0.226

Length

321 amino acids

Sequence
(BLAST)

001: MLIDLFWISD ATWQMAAGRG ISQLLKKAFR QHSYDSSLLS SFRINHPEGA SGFTGLKALA ILGVGASGLL SFGTIASADE AEHGLESPSY PWPHEGILSS
101: YDHASIRRGH QVYQQVCASC HSMSLISYRD LVGVAYTEEE TKAMTAEIEV VDGPNDEGEM FTRPGKLSDR LPQPYANEQA ARFSNGGAYP PDLSLITKAR
201: HNGQNYVFSL LTGYRDPPAG VSIREGLHYN PYFPGGAIAM PKMLSDGAVE YEDGTPATEA QMGKDVVSFL SWAAEPEMEE RKLMGVKWIF LLSLALMQAA
301: YYRRMKWSVY KSRKLVLDVV N

Best Arabidopsis Sequence Match ( AT5G40810.1 )
(BLAST)

001: MVGGGVIRQL LRRKLHSQSV ATPVLSWLSS KKANEDAGSA GLRAFALMGA GITGLLSFST VASADEAEHG LECPNYPWPH EGILSSYDHA SIRRGHQVYQ
101: QVCASCHSMS LISYRDLVGV AYTEEEAKAM AAEIEVVDGP NDEGEMFTRP GKLSDRLPEP YSNESAARFA NGGAYPPDLS LVTKARHNGQ NYVFALLTGY
201: RDPPAGISIR EGLHYNPYFP GGAIAMPKML NDEAVEYEDG TPATEAQMGK DVVSFLSWAA EPEMEERKLM GFKWIFLLSL ALLQAAYYRR LKWSVLKSRK
301: LVLDVVN

Arabidopsis Description

CYC12Cytochrome c1 2, heme protein, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FKS5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.