Factsheet for Bra025260.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13693	Canola	mitochondrion	89.14	88.27
Bra039089.1-P	Field mustard	mitochondrion	88.16	87.3
Bra032991.1-P	Field mustard	mitochondrion	87.83	86.97
AT3G27240.1	Thale cress	mitochondrion	87.17	86.32
Solyc02g093900.2.1	Tomato	nucleus, plastid	70.72	79.93
HORVU3Hr1G098650.1	Barley	cytosol, peroxisome, plastid	51.64	78.89
KRG94438	Soybean	mitochondrion	75.99	75.24
KXG25408	Sorghum	mitochondrion	74.67	74.67
KRH07017	Soybean	mitochondrion	75.33	74.59
PGSC0003DMT400052104	Potato	mitochondrion	75.99	74.52
Os05t0301700-01	Rice	mitochondrion	74.34	74.34
VIT_14s0171g00330.t01	Wine grape	mitochondrion	75.33	73.87
Zm00001d049959_P001	Maize	mitochondrion	74.34	73.62
CDX83670	Canola	mitochondrion	89.8	73.39
TraesCS7A01G278100.1	Wheat	golgi, unclear	73.36	73.36
TraesCS7B01G175500.1	Wheat	mitochondrion	73.36	73.36
TraesCS7D01G277900.1	Wheat	mitochondrion	73.36	73.36
KRH57638	Soybean	mitochondrion	74.01	73.05
KRG94326	Soybean	mitochondrion	73.68	72.96
HORVU7Hr1G058850.1	Barley	mitochondrion	72.37	72.37
Os01t0935700-02	Rice	mitochondrion	72.37	72.37
TraesCS3D01G451000.1	Wheat	mitochondrion	72.37	71.66
TraesCS3A01G458200.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion	72.04	68.22
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, vacuole	29.61	66.18
Bra025544.1-P	Field mustard	cytosol	16.45	60.98
Zm00001d031967_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	72.04	59.84
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	20.39	54.87
GSMUA_Achr5P17710_001	Banana	cytosol	34.21	42.45
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, mitochondrion, plastid	2.3	18.42

Protein Annotations

Gene3D:1.10.760.10	MapMan:2.4.3.2	EnsemblPlantsGene:Bra025260	EnsemblPlants:Bra025260.1	EnsemblPlants:Bra025260.1-P	InterPro:Cyt_c-like_dom
InterPro:Cyt_c-like_dom_sf	InterPro:Cyt_c1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0020037	GO:GO:0022900
GO:GO:0046872	InterPro:IPR009056	InterPro:IPR036909	UniProt:M4E904	PFAM:PF02167	PRINTS:PR00603
PFscan:PS51007	PANTHER:PTHR10266	PANTHER:PTHR10266:SF6	SUPFAM:SSF46626	UniParc:UPI000253F5B2	SEG:seg

Description

AT3G27240 (E=9e-141) | cytochrome c1, putative

Coordinates

chrA06:+:22530901..22532821

Molecular Weight (calculated)

32486.2 Da

IEP (calculated)

4.727

GRAVY (calculated)

-0.171

Length

304 amino acids

Sequence
(BLAST)

001: MVGGGVIQQI LRRKLHSQSV ATPVLSWFSS KKAHVDAGSS GVRAFALLGA GVTGLLSFST VASADEAEHG LACPDYPWPH DGILSSYDHA SIRRGHQVYQ
101: QVCASCHSMS LISYRDLVGV AYTEEEAKAI AAEIEVVDAP NDEGEMFTRP GKLSDRLPQP YANESAARFA NGGAYPPDLS LITKARHNGQ NYVFALLTGY
201: RDPPAGISIR EGLHYNPYFP GGAIAMPKML NDEAVEYEDG VPATEAQMGK DVVSFLSWAA EPEMEERKLV DGFQVDIPTI AGSAPSSVLQ ATEMVGSQVP
301: EAGS

Best Arabidopsis Sequence Match ( AT3G27240.1 )
(BLAST)

001: MVGGGVIQQI LRRKLHSQSL ATPVLSWFSS KKAHEDAGSS GVRALALLGA GVTGLLSFST VASADEAEHG LESPEYPWPH DGILSSYDHA SIRRGHQVYQ
101: QVCASCHSMS LISYRDLVGV AYTEEEAKAM AAEIEVVDGP NDEGEMFTRP GKLSDRFPQP YANESAARFA NGGAYPPDLS LITKARHNGP NYVFALLTGY
201: RDPPAGISIR EGLHYNPYFP GGAIAMPKML NDEAVEYEDG VPATEAQMGK DIVSFLAWAA EPEMEERKLM GFKWIFLLSL ALLQAAYYRR LKWSVLKSRK
301: LVLDVVN

Arabidopsis Description

CYC11Cytochrome c1 1, heme protein, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LK29]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.