CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 9

Predictors

GFP

MS/MS

Papers

mitochondrion: 21766870
mitochondrion: 27780359

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 21766870 doi

S Komatsu, A Yamamoto, T Nakamura, MZ Nouri, Y Nanjo, K Nishizawa, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57638	Soybean	mitochondrion	96.74	96.43
HORVU3Hr1G098650.1	Barley	cytosol, peroxisome, plastid	60.26	92.96
Solyc02g093900.2.1	Tomato	nucleus, plastid	81.11	92.57
Bra025544.1-P	Field mustard	cytosol	24.1	90.24
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, mitochondrion, plastid	11.07	89.47
KRH07017	Soybean	mitochondrion	88.27	88.27
KRG94438	Soybean	mitochondrion	87.3	87.3
PGSC0003DMT400052104	Potato	mitochondrion	85.02	84.19
AT5G40810.1	Thale cress	mitochondrion	83.06	83.06
AT3G27240.1	Thale cress	mitochondrion	82.74	82.74
Os05t0301700-01	Rice	mitochondrion	81.76	82.57
KXG25408	Sorghum	mitochondrion	81.76	82.57
CDY34168	Canola	mitochondrion	82.41	82.41
Bra032991.1-P	Field mustard	mitochondrion	82.41	82.41
Bra039089.1-P	Field mustard	mitochondrion	82.41	82.41
TraesCS7D01G277900.1	Wheat	mitochondrion	81.43	82.24
TraesCS7A01G278100.1	Wheat	golgi, unclear	81.43	82.24
CDY13693	Canola	mitochondrion	82.08	82.08
VIT_14s0171g00330.t01	Wine grape	mitochondrion	82.74	81.94
TraesCS7B01G175500.1	Wheat	mitochondrion	81.11	81.91
CDY28482	Canola	mitochondrion	81.76	81.76
HORVU7Hr1G058850.1	Barley	mitochondrion	80.78	81.58
Zm00001d049959_P001	Maize	mitochondrion	81.43	81.43
TraesCS3D01G451000.1	Wheat	mitochondrion	80.78	80.78
Os01t0935700-02	Rice	mitochondrion	79.8	80.59
TraesCS3A01G458200.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion	80.46	76.95
Bra025260.1-P	Field mustard	mitochondrion	72.96	73.68
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, vacuole	31.92	72.06
CDY20058	Canola	plastid	82.41	69.51
CDX83670	Canola	mitochondrion	82.08	67.74
Zm00001d031967_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	80.13	67.21
CDY00164	Canola	endoplasmic reticulum	82.41	66.75
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	21.17	57.52
CDY36384	Canola	plastid	37.46	56.37
GSMUA_Achr5P17710_001	Banana	cytosol	41.04	51.43

Protein Annotations

Gene3D:1.10.760.10	Gene3D:1.20.5.100	EntrezGene:100803087	MapMan:2.4.3.2	EMBL:ACUP02011929	InterPro:Cyt_c-like_dom
InterPro:Cyt_c-like_dom_sf	InterPro:Cyt_c1	InterPro:Cyt_c1_TM_anchor_C	EnsemblPlantsGene:GLYMA_19G076400	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005750	GO:GO:0006091	GO:GO:0006122	GO:GO:0006139	GO:GO:0006810	GO:GO:0008150
GO:GO:0008152	GO:GO:0009055	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0020037
GO:GO:0022900	GO:GO:0042776	GO:GO:0045153	GO:GO:0045155	GO:GO:0046872	UniProt:I1N7F4
InterPro:IPR009056	InterPro:IPR036909	EnsemblPlants:KRG94326	ProteinID:KRG94326	ProteinID:KRG94326.1	ProteinID:KRG94327.1
PFAM:PF02167	PRINTS:PR00603	PFscan:PS51007	PANTHER:PTHR10266	PANTHER:PTHR10266:SF6	SUPFAM:SSF46626
SUPFAM:SSF81496	UniParc:UPI000233F2DC	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr19:+:27521590..27530088

Molecular Weight (calculated)

33731.1 Da

IEP (calculated)

7.251

GRAVY (calculated)

-0.231

Length

307 amino acids

Sequence
(BLAST)

001: MAGGVIRQLF RRKLQSHSPN SSFKSSIITK KDGADSTGSN SLRVLAFVGA GVSGFLGFAT TAFADEAEHG LACPSYPWPH KGILSSYDHA SIRRGHQVYQ
101: EVCASCHSMS LISYRDLVGV AYTEEEVKAM AAEIEVVDGP NDEGEMFTRP GKLSDRFPQP YANEAAARFA NGGAYPPDLS LVTKARHNGQ NYVFSLLTGY
201: RDPPAGVSIR EGLHYNPYFP GGAIAMPKML NDGAVEYEDG TPATESQMGK DIVSFLTWAA EPEMEERKLM GFKWIFVLSL ALLQAAYYRR LRWSVLKSRK
301: LVLDVVN

Best Arabidopsis Sequence Match ( AT3G27240.1 )
(BLAST)

001: MVGGGVIQQI LRRKLHSQSL ATPVLSWFSS KKAHEDAGSS GVRALALLGA GVTGLLSFST VASADEAEHG LESPEYPWPH DGILSSYDHA SIRRGHQVYQ
101: QVCASCHSMS LISYRDLVGV AYTEEEAKAM AAEIEVVDGP NDEGEMFTRP GKLSDRFPQP YANESAARFA NGGAYPPDLS LITKARHNGP NYVFALLTGY
201: RDPPAGISIR EGLHYNPYFP GGAIAMPKML NDEAVEYEDG VPATEAQMGK DIVSFLAWAA EPEMEERKLM GFKWIFLLSL ALLQAAYYRR LKWSVLKSRK
301: LVLDVVN

Arabidopsis Description

CYC11Cytochrome c1 1, heme protein, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LK29]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.