Factsheet for Solyc06g067920.2.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, nucleus, endoplasmic reticulum

Predictor Summary:

plastid 2
mitochondrion 8

Predictors

GFP

MS/MS

Papers

unclear: 26455813
nucleus: 28394025
endoplasmic reticulum: 29145071

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29145071 doi

P Ibort, H Imai, M Uemura, R Aroca

Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400073387	Potato	mitochondrion	98.44	98.44
Solyc02g093900.2.1	Tomato	nucleus, plastid	79.38	94.42
HORVU3Hr1G098650.1	Barley	cytosol, peroxisome, plastid	58.44	93.97
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, mitochondrion, plastid	10.62	89.47
Solyc12g042920.1.1	Tomato	nucleus	89.38	88.27
KXG25408	Sorghum	mitochondrion	79.38	83.55
Zm00001d049959_P001	Maize	mitochondrion	79.38	82.74
Os05t0301700-01	Rice	mitochondrion	78.44	82.57
Os01t0935700-02	Rice	mitochondrion	77.81	81.91
TraesCS7A01G278100.1	Wheat	golgi, unclear	77.5	81.58
TraesCS7B01G175500.1	Wheat	mitochondrion	77.5	81.58
TraesCS7D01G277900.1	Wheat	mitochondrion	77.5	81.58
HORVU7Hr1G058850.1	Barley	mitochondrion	77.19	81.25
TraesCS3D01G451000.1	Wheat	mitochondrion	77.5	80.78
VIT_09s0002g05950.t01	Wine grape	endoplasmic reticulum, golgi	79.69	80.7
TraesCS3A01G458200.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion	77.19	76.95
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, vacuole	29.06	68.38
Zm00001d031967_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	78.12	68.31
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	21.25	60.18
GSMUA_Achr5P17710_001	Banana	cytosol	40.62	53.06

Protein Annotations

Gene3D:1.10.760.10	Gene3D:1.20.5.100	MapMan:2.4.3.2	InterPro:Cyt_c-like_dom	InterPro:Cyt_c-like_dom_sf	InterPro:Cyt_c1
InterPro:Cyt_c1_TM_anchor_C	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005750	GO:GO:0006091	GO:GO:0006122
GO:GO:0006139	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009058
GO:GO:0009987	GO:GO:0016020	GO:GO:0020037	GO:GO:0042776	GO:GO:0045153	GO:GO:0045155
GO:GO:0046872	InterPro:IPR009056	InterPro:IPR036909	UniProt:K4C7W7	PFAM:PF02167	PRINTS:PR00603
PFscan:PS51007	PANTHER:PTHR10266	PANTHER:PTHR10266:SF6	SUPFAM:SSF46626	SUPFAM:SSF81496	EnsemblPlantsGene:Solyc06g067920.2
EnsemblPlants:Solyc06g067920.2.1	UniParc:UPI0002766167	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6:-:42097904..42104300

Molecular Weight (calculated)

35222.0 Da

IEP (calculated)

6.956

GRAVY (calculated)

-0.244

Length

320 amino acids

Sequence
(BLAST)

001: MSLGKKIRIG FDGFGRINRF ITRGAAQTND SKLHSRNDAL KRGLDGLESA GSKSFRALAA IGAGVSGLLS FATIAYSDEA EHGLECPSYP WPHEGILSSY
101: DHASIRRGHQ VYQQVCASCH SMSLISYRDL VGVAYTEEET KAMAAEIEVV DGPNDEGEMF TRPGKLSDRF PQPYANEAAA RFANGGAYPP DLSLITKARH
201: NGQNYVFALL TGYRDPPAGV LIREGLHYNP YFPGGAIAMP KMLNDGAVEY EDGIPATEAQ MGKDVVSFLS WAAEPEMEER KLMGFKWIFV LSLALLQAAY
301: YRRLRWSVLK SRKLVLDVVN

Best Arabidopsis Sequence Match ( AT5G40810.1 )
(BLAST)

001: MVGGGVIRQL LRRKLHSQSV ATPVLSWLSS KKANEDAGSA GLRAFALMGA GITGLLSFST VASADEAEHG LECPNYPWPH EGILSSYDHA SIRRGHQVYQ
101: QVCASCHSMS LISYRDLVGV AYTEEEAKAM AAEIEVVDGP NDEGEMFTRP GKLSDRLPEP YSNESAARFA NGGAYPPDLS LVTKARHNGQ NYVFALLTGY
201: RDPPAGISIR EGLHYNPYFP GGAIAMPKML NDEAVEYEDG TPATEAQMGK DVVSFLSWAA EPEMEERKLM GFKWIFLLSL ALLQAAYYRR LKWSVLKSRK
301: LVLDVVN

Arabidopsis Description

CYC12Cytochrome c1 2, heme protein, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FKS5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.