CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 1
plastid 1
endoplasmic reticulum 4
extracellular 2
vacuole 3
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
BAC19894
Os01t0935700-02
Os04t0693050-01
Os05t0301700-01
Os05t0420600-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATMG00960.1	Os04t0693050-01	AT1G22840.1	18644794
ATMG00960.1	Os05t0420600-01	AT1G22840.1	18644794
ATMG00960.1	Os01t0935700-02	AT5G40810.1	18644794
ATMG00960.1	Os05t0301700-01	AT5G40810.1	18644794
ATMG00960.1	BAC19894	ATMG00180.1	18644794

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G451000.1	Wheat	mitochondrion	48.32	97.29
TraesCS7D01G533300.1	Wheat	endoplasmic reticulum, mitochondrion, plasma membrane	48.15	96.95
TraesCS2A01G239800.1	Wheat	mitochondrion	47.47	95.59
BAV58158	Barley	plasma membrane	94.11	94.91
HORVU2Hr1G086550.1	Barley	plasma membrane	93.27	94.06
TraesCS6D01G200900.1	Wheat	plastid	45.29	94.06
TraesCS7D01G238600.1	Wheat	plasma membrane	88.72	91.81
ATMG00960.1	Thale cress	cytosol, peroxisome, plasma membrane	30.98	90.64
TraesCS6D01G375100.1	Wheat	mitochondrion	47.14	90.61
GRMZM5G867512_P01	Maize	mitochondrion	92.76	88.87
GSMUA_AchrUn_...	Banana	plasma membrane	49.49	80.55
AT2G07768.1	Thale cress	mitochondrion	20.03	77.27
CDY69820	Canola	mitochondrion	13.97	68.03
CDY17575	Canola	mitochondrion	12.29	57.94
CDY17565	Canola	mitochondrion	13.64	51.27
CDY45536	Canola	mitochondrion	15.99	45.67

Protein Annotations

MapMan:2.4.4.2.3.2	EntrezGene:6450192	EnsemblPlants:BAC19893	EnsemblPlantsGene:BAC19893	ProteinID:BAC19893	ProteinID:BAC19893.2
InterPro:Cyt_c_assembly	InterPro:Cyt_c_biogenesis	InterPro:Cyt_c_biogenesis_plant	GO:GO:0003674	GO:GO:0005215	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006810
GO:GO:0008150	GO:GO:0009987	GO:GO:0015232	GO:GO:0015886	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0017004	GO:GO:0020037	PFAM:PF01578	PIRSF:PIRSF005240	PRINTS:PR01410
PRINTS:PR01412	PANTHER:PTHR30009	PANTHER:PTHR30009:SF23	UniProt:Q8HCN0	TMHMM:TMhelix	UniParc:UPI000009ACC8
UniParc:UPI00004E56A7	RefSeq:YP_002000588.1	SEG:seg	:	:	:

Description

ccmFnCytochrome c biogenesis Fn

Coordinates

chrMt:-:322071..323855

Molecular Weight (calculated)

66652.6 Da

IEP (calculated)

10.815

GRAVY (calculated)

-0.047

Length

594 amino acids

Sequence
(BLAST)

001: MSINEFSHYL LFPGLFVAFT YNKKQPPAFG AAPAFWCILL PFLGLSFRHI PNNLSNYNVL TGNASFFYQI SGAWSNHEGS ILSWCWIPSF YGFLFCYRGR
101: PQSHNVSKRR GYRETFIFSF VSNFVKNSIL SLQQKSGAAP QLYTPFVRRT FVDSELRSQS KRPFNGPALF NAPLDPVLKM SFALLGAGRS RGSREGKRTN
201: LLLHLARDEK ERASSIDEQQ IDGALAIALF FSSFLSASSD PFVRNFFVRT EPLAESNPVP QDPISAIHPP CIYAGDVASA MGFGLCRSKM MNGIVALHSP
301: PMRKDAAEKN GTLLRSAGCV GSHIRSSLFT RSFKHFVGGA PALLLRSNRS LLMLLRRRFF AFSSLWTGAL MDTGREQAKR VVRNGKKDTT TSPLCWTAGA
401: NTVVSDQDQE PIRIWILTCR LFLTVGISPG SWWAHHELGR GGWWFRDPVE NASFMPRVLA TARIHSVILP LLHSWTSLLN ILTLPCCVSG TFSIRSGLLA
501: PVHSSATDDT RGRFLWRFFL LITGISMTLF YQMKQEASVR RTYKKEMVVA RSTLVHLRHS ARAQPRPVML WKNLAYCWAG YSEPATGCRI SSRP

Best Arabidopsis Sequence Match ( ATMG00830.1 )
(BLAST)

001: MSISIYEFFH YSLFPGLFVA FTYNKKQPPA FGAAPAFWCI LLSFLGLSFC HIPNNLSNYN VLTANAPFFY QISGTWSNHE GSILLWCRIP NFYGFFLCYR
101: GRPQSHNVLK QGGHRESLFF FFVSNFVKNS ILSLPRYEQE SGLKNQLYTP FVLRTLVDSE LRSRRNRTFD GPALFYAPLY PERKIKNPLD AWRSRGSREG
201: KRTHPLLHLA RDDKERASSI DEQRIDGALG IALFFSPFLS ASSDPFVRNF FVCTEPLAES NPVPQDPISA IHPPCIYAGD VASAEGFGLC RSKMMNGIVA
301: LHSPPMRKDA AEKNGTLLRS AGCVGSRITS ELFTLKFKHV GAKCYPALLL RSNRSPLMLL RRRFFAFSSF WAGARSHSTK RY

Arabidopsis Description

CCB382CcmFN1 [Source:UniProtKB/TrEMBL;Acc:G1C2S2]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.