Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 5
- cytosol 2
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
mitochondrion:
15069638
mitochondrion: 15276442 mitochondrion: 19010998 nucleus: 19621931 plastid: 21433289 mitochondrion: 23027867 plasma membrane: 27800704 extracellular: 28232208 |
msms PMID:
15276442
doi
Risø National Laboratory, Plant Research Department, P.O. Box 49, DK-4000 Roskilde, Denmark.
msms PMID:
23027867
doi
State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan 430072, China.
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID:
15069638
doi
Department of Molecular Genetics, National Institute of Agrobiological Sciences, 305-8602, Tsukuba, Japan.
msms PMID:
19010998
doi
Australian Research Council Centre of Excellence in Plant Energy Biology, M316, University of Western Australia, Crawley, 6009 Western Australia, Australia.
msms PMID:
21433289
doi
Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.
msms PMID:
28232208
doi
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Zm00001d042600_P001 | Maize | cytosol | 95.54 | 95.54 |
EES03996 | Sorghum | cytosol | 95.54 | 95.54 |
Solyc01g103220.2.1 | Tomato | extracellular, plastid, unclear | 93.75 | 93.75 |
PGSC0003DMT400063997 | Potato | cytosol | 92.86 | 92.86 |
Bra000699.1-P | Field mustard | cytosol | 91.96 | 91.96 |
CDX90744 | Canola | cytosol | 91.96 | 91.96 |
PGSC0003DMT400002609 | Potato | cytosol | 91.07 | 91.07 |
CDY05083 | Canola | cytosol | 91.07 | 91.07 |
Bra037901.1-P | Field mustard | cytosol | 81.25 | 91.0 |
AT4G10040.1 | Thale cress | cytosol | 90.18 | 90.18 |
Solyc11g042420.1.1 | Tomato | cytosol | 90.18 | 90.18 |
CDY25756 | Canola | cytosol | 90.18 | 90.18 |
CDY12506 | Canola | cytosol | 90.18 | 90.18 |
Bra012346.1-P | Field mustard | cytosol | 90.18 | 90.18 |
CDY21393 | Canola | cytosol | 89.29 | 89.29 |
CDY04780 | Canola | cytosol | 89.29 | 89.29 |
Bra024541.1-P | Field mustard | cytosol | 89.29 | 89.29 |
CDX99521 | Canola | cytosol | 81.25 | 85.85 |
AT1G22840.1 | Thale cress | cytosol | 86.61 | 85.09 |
Os01t0885000-01 | Rice | cytosol | 73.21 | 73.87 |
Os04t0693050-01 | Rice | plastid | 61.61 | 72.63 |
KRH16722 | Soybean | mitochondrion | 26.79 | 33.33 |
Protein Annotations
Gene3D:1.10.760.10 | PDB:1CCR | MapMan:2.4.4.1 | EntrezGene:4338825 | ProteinID:AAT44244.1 | ProteinID:AAV25652.1 |
EMBL:AK060267 | ProteinID:BAF17492.1 | ProteinID:BAS94074.1 | InterPro:Cyt_c-like_dom | InterPro:Cyt_c-like_dom_sf | InterPro:Cyt_c_1A/1B |
EMBL:D12634 | ProteinID:EAZ34342.1 | ProteinID:EEE63765.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005758 |
GO:GO:0006091 | GO:GO:0006122 | GO:GO:0006123 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
GO:GO:0009055 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0020037 | GO:GO:0022900 | GO:GO:0046872 |
GO:GO:0055114 | GO:GO:0070469 | InterPro:IPR009056 | InterPro:IPR036909 | EnsemblPlantsGene:Os05g0420600 | EnsemblPlants:Os05t0420600-01 |
PFAM:PF00034 | PRINTS:PR00604 | PFscan:PS51007 | PANTHER:PTHR11961 | PANTHER:PTHR11961:SF9 | UniProt:Q0DI31 |
SUPFAM:SSF46626 | UniParc:UPI000016DEAD | RefSeq:XP_015640631.1 | : | : | : |
Description
CYTOCHROME C 1Cytochrome c. (Os05t0420600-01)
Coordinates
chr5:+:20630043..20632322
Molecular Weight (calculated)
12271.7 Da
IEP (calculated)
9.794
GRAVY (calculated)
-0.676
Length
112 amino acids
Sequence
(BLAST)
(BLAST)
001: MASFSEAPPG NPKAGEKIFK TKCAQCHTVD KGAGHKQGPN LNGLFGRQSG TTPGYSYSTA NKNMAVIWEE NTLYDYLLNP KKYIPGTKMV FPGLKKPQER
101: ADLISYLKEA TS
101: ADLISYLKEA TS
001: MASFDEAPPG NPKAGEKIFR TKCAQCHTVE KGAGHKQGPN LNGLFGRQSG TTPGYSYSAA NKSMAVNWEE KTLYDYLLNP KKYIPGTKMV FPGLKKPQDR
101: ADLIAYLKEG TA
101: ADLIAYLKEG TA
Arabidopsis Description
CYTC-2CYTC-2 [Source:UniProtKB/TrEMBL;Acc:A0A178UZN3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.