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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • mitochondrion 5
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:cytosol, mitochondrion
BaCelLo:mitochondrion
EpiLoc:mitochondrion
MultiLoc:cytosol
Plant-mPloc:mitochondrion
PProwler:mitochondrion
WoLF PSORT:mitochondrion
YLoc:cytosol
mitochondrion: 15069638
mitochondrion: 15276442
mitochondrion: 19010998
nucleus: 19621931
plastid: 21433289
mitochondrion: 23027867
plasma membrane: 27800704
extracellular: 28232208
msms PMID: 15276442 doi
BK Kristensen, P Askerlund, NV Bykova, H Egsgaard, IM Møller
Risø National Laboratory, Plant Research Department, P.O. Box 49, DK-4000 Roskilde, Denmark.
msms PMID: 23027867 doi
G Liu, H Tian, YQ Huang, J Hu, YX Ji, SQ Li, YQ Feng, L Guo, YG Zhu
State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan 430072, China.
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 15069638 doi
N Tanaka, M Fujita, H Handa, S Murayama, M Uemura, Y Kawamura, T Mitsui, S Mikami, Y Tozawa, T Yoshinaga, S Komatsu
Department of Molecular Genetics, National Institute of Agrobiological Sciences, 305-8602, Tsukuba, Japan.
msms PMID: 19010998 doi
S Huang, NL Taylor, R Narsai, H Eubel, J Whelan, AH Millar
Australian Research Council Centre of Excellence in Plant Energy Biology, M316, University of Western Australia, Crawley, 6009 Western Australia, Australia.
msms PMID: 21433289 doi
S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky
Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.
msms PMID: 19621931 doi
T Aki, S Yanagisawa
Department of Applied Biological Chemistry, The University of Tokyo, Japan.
msms PMID: 28232208 doi
Y Wang, R Gupta, W Song, HH Huh, SE Lee, J Wu, GK Agrawal, R Rakwal, KY Kang, SR Park, ST Kim
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d042600_P001 Maize cytosol 95.54 95.54
EES03996 Sorghum cytosol 95.54 95.54
Solyc01g103220.2.1 Tomato extracellular, plastid, unclear 93.75 93.75
PGSC0003DMT400063997 Potato cytosol 92.86 92.86
Bra000699.1-P Field mustard cytosol 91.96 91.96
CDX90744 Canola cytosol 91.96 91.96
PGSC0003DMT400002609 Potato cytosol 91.07 91.07
CDY05083 Canola cytosol 91.07 91.07
Bra037901.1-P Field mustard cytosol 81.25 91.0
AT4G10040.1 Thale cress cytosol 90.18 90.18
Solyc11g042420.1.1 Tomato cytosol 90.18 90.18
CDY25756 Canola cytosol 90.18 90.18
CDY12506 Canola cytosol 90.18 90.18
Bra012346.1-P Field mustard cytosol 90.18 90.18
CDY21393 Canola cytosol 89.29 89.29
CDY04780 Canola cytosol 89.29 89.29
Bra024541.1-P Field mustard cytosol 89.29 89.29
CDX99521 Canola cytosol 81.25 85.85
AT1G22840.1 Thale cress cytosol 86.61 85.09
Os01t0885000-01 Rice cytosol 73.21 73.87
Os04t0693050-01 Rice plastid 61.61 72.63
KRH16722 Soybean mitochondrion 26.79 33.33
Protein Annotations
Gene3D:1.10.760.10PDB:1CCRMapMan:2.4.4.1EntrezGene:4338825ProteinID:AAT44244.1ProteinID:AAV25652.1
EMBL:AK060267ProteinID:BAF17492.1ProteinID:BAS94074.1InterPro:Cyt_c-like_domInterPro:Cyt_c-like_dom_sfInterPro:Cyt_c_1A/1B
EMBL:D12634ProteinID:EAZ34342.1ProteinID:EEE63765.1GO:GO:0003674GO:GO:0003824GO:GO:0005488
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005739GO:GO:0005758
GO:GO:0006091GO:GO:0006122GO:GO:0006123GO:GO:0006139GO:GO:0008150GO:GO:0008152
GO:GO:0009055GO:GO:0009987GO:GO:0016020GO:GO:0020037GO:GO:0022900GO:GO:0046872
GO:GO:0055114GO:GO:0070469InterPro:IPR009056InterPro:IPR036909EnsemblPlantsGene:Os05g0420600EnsemblPlants:Os05t0420600-01
PFAM:PF00034PRINTS:PR00604PFscan:PS51007PANTHER:PTHR11961PANTHER:PTHR11961:SF9UniProt:Q0DI31
SUPFAM:SSF46626UniParc:UPI000016DEADRefSeq:XP_015640631.1:::
Description
CYTOCHROME C 1Cytochrome c. (Os05t0420600-01)
Coordinates
chr5:+:20630043..20632322
Molecular Weight (calculated)
12271.7 Da
IEP (calculated)
9.794
GRAVY (calculated)
-0.676
Length
112 amino acids
Sequence
(BLAST)
001: MASFSEAPPG NPKAGEKIFK TKCAQCHTVD KGAGHKQGPN LNGLFGRQSG TTPGYSYSTA NKNMAVIWEE NTLYDYLLNP KKYIPGTKMV FPGLKKPQER
101: ADLISYLKEA TS
Best Arabidopsis Sequence Match ( AT4G10040.1 )
(BLAST)
001: MASFDEAPPG NPKAGEKIFR TKCAQCHTVE KGAGHKQGPN LNGLFGRQSG TTPGYSYSAA NKSMAVNWEE KTLYDYLLNP KKYIPGTKMV FPGLKKPQDR
101: ADLIAYLKEG TA
Arabidopsis Description
CYTC-2CYTC-2 [Source:UniProtKB/TrEMBL;Acc:A0A178UZN3]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.