Factsheet for Bra012346.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 5
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	mitochondrion
EpiLoc:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000638.1-P
Bra036288.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G22840.1	Bra036288.1-P	AT4G01920.1	21798944
AT1G22840.1	Bra000638.1-P	AT4G08150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY12506	Canola	cytosol	100.0	100.0
CDY25756	Canola	cytosol	100.0	100.0
Bra024541.1-P	Field mustard	cytosol	99.11	99.11
Bra000699.1-P	Field mustard	cytosol	95.54	95.54
Bra037901.1-P	Field mustard	cytosol	84.82	95.0
AT1G22840.1	Thale cress	cytosol	95.54	93.86
VIT_18s0001g05810.t01	Wine grape	cytosol	93.75	93.75
EES18250	Sorghum	cytosol	92.86	92.86
Zm00001d038218_P001	Maize	mitochondrion	92.86	92.86
PGSC0003DMT400063997	Potato	cytosol	92.86	92.86
KRH40245	Soybean	cytosol	92.86	92.86
Zm00001d010236_P001	Maize	plastid	91.96	91.96
Solyc01g103220.2.1	Tomato	extracellular, plastid, unclear	91.96	91.96
KRH00982	Soybean	cytosol	91.96	91.96
TraesCS3D01G400400.1	Wheat	cytosol	91.07	91.07
PGSC0003DMT400002609	Potato	cytosol	91.07	91.07
TraesCS3B01G438700.1	Wheat	cytosol	91.07	91.07
TraesCS1D01G263400.1	Wheat	cytosol	91.07	90.27
TraesCS1A01G263300.1	Wheat	extracellular, unclear	91.07	90.27
Os05t0420600-01	Rice	mitochondrion	90.18	90.18
Solyc11g042420.1.1	Tomato	cytosol	90.18	90.18
TraesCS3A01G405000.1	Wheat	cytosol	89.29	89.29
Zm00001d042600_P001	Maize	cytosol	89.29	89.29
GSMUA_Achr7P23550_001	Banana	cytosol	89.29	89.29
GSMUA_Achr6P18470_001	Banana	cytosol	89.29	89.29
GSMUA_Achr5P01400_001	Banana	cytosol	89.29	89.29
EES03996	Sorghum	cytosol	89.29	89.29
GSMUA_Achr11P...	Banana	cytosol	87.5	86.73
TraesCS1B01G273900.1	Wheat	cytosol	76.79	76.11
Os04t0693050-01	Rice	plastid	58.93	69.47
HORVU3Hr1G090840.1	Barley	mitochondrion, plastid	89.29	67.57
HORVU1Hr1G063940.1	Barley	cytosol, mitochondrion, nucleus, plastid	91.07	60.71

Protein Annotations

Gene3D:1.10.760.10	MapMan:2.4.4.1	EnsemblPlantsGene:Bra012346	EnsemblPlants:Bra012346.1	EnsemblPlants:Bra012346.1-P	InterPro:Cyt_c-like_dom
InterPro:Cyt_c-like_dom_sf	InterPro:Cyt_c_1A/1B	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0016020	GO:GO:0020037	GO:GO:0022900
GO:GO:0046872	GO:GO:0055114	GO:GO:0070469	InterPro:IPR009056	InterPro:IPR036909	UniProt:M4D786
PFAM:PF00034	PRINTS:PR00604	PFscan:PS51007	PANTHER:PTHR11961	PANTHER:PTHR11961:SF9	SUPFAM:SSF46626
UniParc:UPI0001BA87ED	:	:	:	:	:

Description

AT1G22840 (E=8e-061) CYTC-1, ATCYTC-A | CYTC-1 (CYTOCHROME C-1); electron carrier/ heme binding / iron ion binding

Coordinates

chrA07:-:8315332..8315988

Molecular Weight (calculated)

12242.5 Da

IEP (calculated)

9.779

GRAVY (calculated)

-0.726

Length

112 amino acids

Sequence
(BLAST)

001: MASFDEAPPG NSKAGEKIFR TKCAQCHTVD KGAGHKQGPN LNGLFGRQSG TTAGYSYSAA NKNKAVEWEE KTLYDYLLNP KKYIPGTKMV FPGLKKPQDR
101: ADLIAYLKEA TA

Best Arabidopsis Sequence Match ( AT1G22840.1 )
(BLAST)

001: MASFDEAPPG NAKAGEKIFR TKCAQCHTVE AGAGHKQGPN LNGLFGRQSG TTAGYSYSAA NKNKAVEWEE KALYDYLLNP KKYIPGTKMV FPGLKKPQDR
101: ADLIAYLKES TAPK

Arabidopsis Description

CYTC-1CYTC-1 [Source:UniProtKB/TrEMBL;Acc:A0A178W284]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.