Factsheet for VIT_18s0001g05810.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 5
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	mitochondrion
EpiLoc:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_14s0068g00300.t01
VIT_18s0001g08380.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G22840.1	VIT_18s0001g08380.t01	AT4G08150.1	21798944
AT4G10040.1	VIT_14s0068g00300.t01	AT3G29575.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000699.1-P	Field mustard	cytosol	95.54	95.54
CDX90744	Canola	cytosol	95.54	95.54
Bra037901.1-P	Field mustard	cytosol	84.82	95.0
CDY05083	Canola	cytosol	94.64	94.64
AT4G10040.1	Thale cress	cytosol	93.75	93.75
Zm00001d042600_P001	Maize	cytosol	93.75	93.75
TraesCS3D01G400400.1	Wheat	cytosol	93.75	93.75
TraesCS3B01G438700.1	Wheat	cytosol	93.75	93.75
EES03996	Sorghum	cytosol	93.75	93.75
CDY25756	Canola	cytosol	93.75	93.75
CDY12506	Canola	cytosol	93.75	93.75
Bra012346.1-P	Field mustard	cytosol	93.75	93.75
CDY21393	Canola	cytosol	92.86	92.86
Bra024541.1-P	Field mustard	cytosol	92.86	92.86
TraesCS3A01G405000.1	Wheat	cytosol	92.86	92.86
PGSC0003DMT400063997	Potato	cytosol	92.86	92.86
CDY04780	Canola	cytosol	92.86	92.86
Solyc01g103220.2.1	Tomato	extracellular, plastid, unclear	91.96	91.96
PGSC0003DMT400002609	Potato	cytosol	91.07	91.07
Solyc11g042420.1.1	Tomato	cytosol	90.18	90.18
CDX99521	Canola	cytosol	84.82	89.62
VIT_12s0035g01210.t01	Wine grape	mitochondrion	89.29	89.29
AT1G22840.1	Thale cress	cytosol	90.18	88.6
VIT_13s0106g00090.t01	Wine grape	cytosol, mitochondrion, nucleus	25.0	87.5
Os04t0693050-01	Rice	plastid	60.71	71.58
HORVU3Hr1G090840.1	Barley	mitochondrion, plastid	93.75	70.95
GSMUA_Achr5P16900_001	Banana	cytosol	48.21	49.54
KRH16722	Soybean	mitochondrion	26.79	33.33

Protein Annotations

Gene3D:1.10.760.10	EntrezGene:100243029	wikigene:100243029	MapMan:2.4.4.1	ProteinID:ACC61674	ProteinID:ACC61674.1
EMBL:AM432116	UniProt:B2LXS2	ProteinID:CAN60482	ProteinID:CAN60482.1	ProteinID:CBI31322	ProteinID:CBI31322.3
InterPro:Cyt_c-like_dom	InterPro:Cyt_c-like_dom_sf	InterPro:Cyt_c_1A/1B	EMBL:EU595418	EMBL:FN595996	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0005758	GO:GO:0006091	GO:GO:0006122	GO:GO:0006123	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0016020	GO:GO:0020037
GO:GO:0022900	GO:GO:0046872	GO:GO:0055114	GO:GO:0070469	InterPro:IPR009056	InterPro:IPR036909
EntrezGene:LOC100243029	wikigene:LOC100243029	RefSeq:NP_001267985.1	PFAM:PF00034	PRINTS:PR00604	PFscan:PS51007
PANTHER:PTHR11961	PANTHER:PTHR11961:SF9	SUPFAM:SSF46626	TIGR:TC53161	UniParc:UPI00015C99E3	ArrayExpress:VIT_18s0001g05810
EnsemblPlantsGene:VIT_18s0001g05810	EnsemblPlants:VIT_18s0001g05810.t01	:	:	:	:

Description

Mitochondrial cytochrome c [Source:UniProtKB/TrEMBL;Acc:B2LXS2]

Coordinates

chr18_random:-:4501821..4505048

Molecular Weight (calculated)

12179.6 Da

IEP (calculated)

9.794

GRAVY (calculated)

-0.584

Length

112 amino acids

Sequence
(BLAST)

001: MASFDEAPPG NPAAGEKIFK TKCAQCHTVD KGAGHKQGPN LNGLFGRQSG TTPGYSYSAA NKNMAVIWEE KTLYDYLLNP KKYIPGTKMV FPGLKKPQDR
101: ADLIAYLKQA TA

Best Arabidopsis Sequence Match ( AT4G10040.1 )
(BLAST)

001: MASFDEAPPG NPKAGEKIFR TKCAQCHTVE KGAGHKQGPN LNGLFGRQSG TTPGYSYSAA NKSMAVNWEE KTLYDYLLNP KKYIPGTKMV FPGLKKPQDR
101: ADLIAYLKEG TA

Arabidopsis Description

CYTC-2CYTC-2 [Source:UniProtKB/TrEMBL;Acc:A0A178UZN3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.