CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 5
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	mitochondrion
EpiLoc:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER89528
EER90950
EER91090
EER92642
EER95833
OQU90921
OQU91064

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G22840.1	EER90950	AT4G08150.1	21798944
AT1G22840.1	EER91090	AT4G08150.1	21798944
AT1G22840.1	EER95833	AT4G08150.1	21798944
AT1G22840.1	OQU90921	AT4G08150.1	21798944
AT1G22840.1	OQU91064	AT4G08150.1	21798944
AT4G10040.1	EER89528	AT3G29575.1	21798944
AT4G10040.1	EER92642	AT3G29575.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d042600_P001	Maize	cytosol	97.32	97.32
TraesCS3D01G400400.1	Wheat	cytosol	95.54	95.54
TraesCS3B01G438700.1	Wheat	cytosol	95.54	95.54
Os05t0420600-01	Rice	mitochondrion	95.54	95.54
TraesCS3A01G405000.1	Wheat	cytosol	94.64	94.64
VIT_18s0001g05810.t01	Wine grape	cytosol	93.75	93.75
Solyc01g103220.2.1	Tomato	extracellular, plastid, unclear	92.86	92.86
PGSC0003DMT400063997	Potato	cytosol	91.96	91.96
EES18250	Sorghum	cytosol	91.96	91.96
AT4G10040.1	Thale cress	cytosol	91.07	91.07
PGSC0003DMT400002609	Potato	cytosol	91.07	91.07
Bra000699.1-P	Field mustard	cytosol	91.07	91.07
CDX90744	Canola	cytosol	91.07	91.07
CDY05083	Canola	cytosol	90.18	90.18
Solyc11g042420.1.1	Tomato	cytosol	90.18	90.18
Bra037901.1-P	Field mustard	cytosol	80.36	90.0
CDY25756	Canola	cytosol	89.29	89.29
CDY12506	Canola	cytosol	89.29	89.29
Bra012346.1-P	Field mustard	cytosol	89.29	89.29
CDY04780	Canola	cytosol	88.39	88.39
Bra024541.1-P	Field mustard	cytosol	88.39	88.39
CDY21393	Canola	cytosol	88.39	88.39
CDX99521	Canola	cytosol	80.36	84.91
AT1G22840.1	Thale cress	cytosol	85.71	84.21
HORVU3Hr1G090840.1	Barley	mitochondrion, plastid	94.64	71.62
KXG27531	Sorghum	mitochondrion	79.46	56.69
GSMUA_Achr5P16900_001	Banana	cytosol	49.11	50.46
KRH16722	Soybean	mitochondrion	25.89	32.22

Protein Annotations

Gene3D:1.10.760.10	MapMan:2.4.4.1	EntrezGene:8061477	UniProt:C5XEM6	InterPro:Cyt_c-like_dom	InterPro:Cyt_c-like_dom_sf
InterPro:Cyt_c_1A/1B	EnsemblPlants:EES03996	ProteinID:EES03996	ProteinID:EES03996.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005758	GO:GO:0006091	GO:GO:0006122	GO:GO:0006123	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0016020	GO:GO:0020037	GO:GO:0046872
GO:GO:0055114	GO:GO:0070469	InterPro:IPR009056	InterPro:IPR036909	PFAM:PF00034	PRINTS:PR00604
PFscan:PS51007	PANTHER:PTHR11961	PANTHER:PTHR11961:SF9	EnsemblPlantsGene:SORBI_3003G380300	SUPFAM:SSF46626	UniParc:UPI0001A853CC
RefSeq:XP_002458876.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:69402871..69406131

Molecular Weight (calculated)

12170.5 Da

IEP (calculated)

9.810

GRAVY (calculated)

-0.577

Length

112 amino acids

Sequence
(BLAST)

001: MASFSEAPPG NPTAGEKIFK TKCAQCHTVD KGAGHKQGPN LNGLFGRQSG TTPGYSYSTA NKSMAVIWEE NTLYDYLLNP KKYIPGTKMV FPGLKKPQER
101: ADLIAYLKNA TA

Best Arabidopsis Sequence Match ( AT4G10040.1 )
(BLAST)

001: MASFDEAPPG NPKAGEKIFR TKCAQCHTVE KGAGHKQGPN LNGLFGRQSG TTPGYSYSAA NKSMAVNWEE KTLYDYLLNP KKYIPGTKMV FPGLKKPQDR
101: ADLIAYLKEG TA

Arabidopsis Description

CYTC-2CYTC-2 [Source:UniProtKB/TrEMBL;Acc:A0A178UZN3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.