Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra037901.1-P | Field mustard | cytosol | 94.34 | 100.0 |
| CDX90744 | Canola | cytosol | 94.34 | 89.29 |
| CDY05083 | Canola | cytosol | 93.4 | 88.39 |
| AT4G10040.1 | Thale cress | cytosol | 91.51 | 86.61 |
| CDY04780 | Canola | cytosol | 89.62 | 84.82 |
| CDY12506 | Canola | cytosol | 89.62 | 84.82 |
| CDY21393 | Canola | cytosol | 89.62 | 84.82 |
| CDY25756 | Canola | cytosol | 89.62 | 84.82 |
| VIT_18s0001g05810.t01 | Wine grape | cytosol | 89.62 | 84.82 |
| KRH40245 | Soybean | cytosol | 87.74 | 83.04 |
| KRH00982 | Soybean | cytosol | 86.79 | 82.14 |
| PGSC0003DMT400063997 | Potato | cytosol | 86.79 | 82.14 |
| GSMUA_Achr6P18470_001 | Banana | cytosol | 85.85 | 81.25 |
| Os05t0420600-01 | Rice | mitochondrion | 85.85 | 81.25 |
| Solyc01g103220.2.1 | Tomato | extracellular, plastid, unclear | 85.85 | 81.25 |
| Zm00001d042600_P001 | Maize | cytosol | 84.91 | 80.36 |
| Zm00001d038218_P001 | Maize | mitochondrion | 84.91 | 80.36 |
| Zm00001d010236_P001 | Maize | plastid | 84.91 | 80.36 |
| EES03996 | Sorghum | cytosol | 84.91 | 80.36 |
| TraesCS3D01G400400.1 | Wheat | cytosol | 84.91 | 80.36 |
| TraesCS3B01G438700.1 | Wheat | cytosol | 84.91 | 80.36 |
| TraesCS3A01G405000.1 | Wheat | cytosol | 84.91 | 80.36 |
| EES18250 | Sorghum | cytosol | 84.91 | 80.36 |
| PGSC0003DMT400002609 | Potato | cytosol | 83.96 | 79.46 |
| GSMUA_Achr5P01400_001 | Banana | cytosol | 83.96 | 79.46 |
| GSMUA_Achr11P... | Banana | cytosol | 83.96 | 78.76 |
| Solyc11g042420.1.1 | Tomato | cytosol | 83.02 | 78.57 |
| GSMUA_Achr7P23550_001 | Banana | cytosol | 83.02 | 78.57 |
| TraesCS1A01G263300.1 | Wheat | extracellular, unclear | 83.02 | 77.88 |
| TraesCS1D01G263400.1 | Wheat | cytosol | 83.02 | 77.88 |
| TraesCS1B01G273900.1 | Wheat | cytosol | 68.87 | 64.6 |
| HORVU3Hr1G090840.1 | Barley | mitochondrion, plastid | 84.91 | 60.81 |
| Os04t0693050-01 | Rice | plastid | 53.77 | 60.0 |
| HORVU1Hr1G063940.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 83.02 | 52.38 |
Protein Annotations
| EnsemblPlants:CDX99521 | EnsemblPlantsGene:GSBRNA2T00107932001 | Gene3D:1.10.760.10 | GO:A0A078EEL3 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0009055 | GO:GO:0020037 | InterPro:Cyt_c-like_dom | InterPro:Cyt_c-like_dom_sf | InterPro:Cyt_c_1A/1B |
| InterPro:IPR009056 | InterPro:IPR036909 | PANTHER:PTHR11961 | PANTHER:PTHR11961:SF9 | PFAM:PF00034 | PFscan:PS51007 |
| ProteinID:CDX99521 | ProteinID:CDX99521.1 | SUPFAM:SSF46626 | UniParc:UPI0004EAC841 | MapMan:2.4.4.1 | : |
Description
BnaC09g24710D
Coordinates
chrLK031911:+:438560..439686
Molecular Weight (calculated)
11748.1 Da
IEP (calculated)
9.557
GRAVY (calculated)
-0.686
Length
106 amino acids
Sequence
(BLAST)
(BLAST)
001: MASFDEAPPG NPKAGEKIFR TKCAQCHTVD KGAGHKQGTT PGYSYSAANK NMAVMWEEKT LYDYLLNPKK YIPGTKMVFP GLKKPQDRAD LIAYLKEGTA
101: YTDARL
101: YTDARL
001: MASFDEAPPG NAKAGEKIFR TKCAQCHTVE AGAGHKQGPN LNGLFGRQSG TTAGYSYSAA NKNKAVEWEE KALYDYLLNP KKYIPGTKMV FPGLKKPQDR
101: ADLIAYLKES TAPK
101: ADLIAYLKES TAPK
Arabidopsis Description
CYTC-1CYTC-1 [Source:UniProtKB/TrEMBL;Acc:A0A178W284]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.