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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: unclear, plastid, extracellular

Predictor Summary:
  • mitochondrion 5
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:extracellular, plastid, unclear
Any Predictor:cytosol, mitochondrion
BaCelLo:mitochondrion
EpiLoc:mitochondrion
MultiLoc:cytosol
Plant-mPloc:mitochondrion
PProwler:mitochondrion
WoLF PSORT:mitochondrion
YLoc:cytosol
plastid: 26371478
unclear: 26455813
extracellular: 29876421
msms PMID: 29876421 doi
L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID: 26371478 doi
M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400063997 Potato cytosol 97.32 97.32
Solyc11g042420.1.1 Tomato cytosol 93.75 93.75
Os05t0420600-01 Rice mitochondrion 93.75 93.75
Zm00001d042600_P001 Maize cytosol 92.86 92.86
TraesCS3D01G400400.1 Wheat cytosol 92.86 92.86
TraesCS3B01G438700.1 Wheat cytosol 92.86 92.86
EES03996 Sorghum cytosol 92.86 92.86
CDY25756 Canola cytosol 91.96 91.96
VIT_18s0001g05810.t01 Wine grape cytosol 91.96 91.96
CDY12506 Canola cytosol 91.96 91.96
CDX90744 Canola cytosol 91.96 91.96
Bra012346.1-P Field mustard cytosol 91.96 91.96
Bra000699.1-P Field mustard cytosol 91.96 91.96
CDY05083 Canola cytosol 91.07 91.07
CDY21393 Canola cytosol 91.07 91.07
CDY04780 Canola cytosol 91.07 91.07
TraesCS3A01G405000.1 Wheat cytosol 91.07 91.07
Bra024541.1-P Field mustard cytosol 91.07 91.07
AT4G10040.1 Thale cress cytosol 91.07 91.07
Bra037901.1-P Field mustard cytosol 81.25 91.0
AT1G22840.1 Thale cress cytosol 88.39 86.84
CDX99521 Canola cytosol 81.25 85.85
HORVU3Hr1G090840.1 Barley mitochondrion, plastid 91.07 68.92
GSMUA_Achr5P16900_001 Banana cytosol 46.43 47.71
KRH16722 Soybean mitochondrion 26.79 33.33
Protein Annotations
Gene3D:1.10.760.10MapMan:2.4.4.1InterPro:Cyt_c-like_domInterPro:Cyt_c-like_dom_sfInterPro:Cyt_c_1A/1BGO:GO:0003674
GO:GO:0003824GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005739GO:GO:0005758GO:GO:0006091GO:GO:0006122GO:GO:0006123GO:GO:0006139
GO:GO:0008150GO:GO:0008152GO:GO:0009055GO:GO:0009987GO:GO:0016020GO:GO:0020037
GO:GO:0022900GO:GO:0046872GO:GO:0055114GO:GO:0070469InterPro:IPR009056InterPro:IPR036909
UniProt:K4B1P8PFAM:PF00034PRINTS:PR00604PFscan:PS51007PANTHER:PTHR11961PANTHER:PTHR11961:SF9
SUPFAM:SSF46626EnsemblPlantsGene:Solyc01g103220.2EnsemblPlants:Solyc01g103220.2.1UniParc:UPI0002768220::
Description
No Description!
Coordinates
chr1:+:91864284..91868742
Molecular Weight (calculated)
12139.5 Da
IEP (calculated)
9.952
GRAVY (calculated)
-0.645
Length
112 amino acids
Sequence
(BLAST)
001: MASFAEAPPG NPKAGEKIFK TKCAQCHTVD KGAGHKQGPN LNGLFGRQSG TTAGYSYSNA NKNMAVNWGE NTLYDYLLNP KKYIPGTKMV FPGLKKPQER
101: ADLIAYLKEA TA
Best Arabidopsis Sequence Match ( AT4G10040.1 )
(BLAST)
001: MASFDEAPPG NPKAGEKIFR TKCAQCHTVE KGAGHKQGPN LNGLFGRQSG TTPGYSYSAA NKSMAVNWEE KTLYDYLLNP KKYIPGTKMV FPGLKKPQDR
101: ADLIAYLKEG TA
Arabidopsis Description
CYTC-2CYTC-2 [Source:UniProtKB/TrEMBL;Acc:A0A178UZN3]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.