Subcellular Localization
min:
: max
Winner_takes_all: unclear, plastid, extracellular
Predictor Summary:
Predictor Summary:
- mitochondrion 5
- cytosol 2
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
plastid:
26371478
unclear: 26455813 extracellular: 29876421 |
msms PMID:
29876421
doi
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID:
26371478
doi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
msms PMID:
26455813
doi
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400063997 | Potato | cytosol | 97.32 | 97.32 |
Solyc11g042420.1.1 | Tomato | cytosol | 93.75 | 93.75 |
Os05t0420600-01 | Rice | mitochondrion | 93.75 | 93.75 |
Zm00001d042600_P001 | Maize | cytosol | 92.86 | 92.86 |
TraesCS3D01G400400.1 | Wheat | cytosol | 92.86 | 92.86 |
TraesCS3B01G438700.1 | Wheat | cytosol | 92.86 | 92.86 |
EES03996 | Sorghum | cytosol | 92.86 | 92.86 |
CDY25756 | Canola | cytosol | 91.96 | 91.96 |
VIT_18s0001g05810.t01 | Wine grape | cytosol | 91.96 | 91.96 |
CDY12506 | Canola | cytosol | 91.96 | 91.96 |
CDX90744 | Canola | cytosol | 91.96 | 91.96 |
Bra012346.1-P | Field mustard | cytosol | 91.96 | 91.96 |
Bra000699.1-P | Field mustard | cytosol | 91.96 | 91.96 |
CDY05083 | Canola | cytosol | 91.07 | 91.07 |
CDY21393 | Canola | cytosol | 91.07 | 91.07 |
CDY04780 | Canola | cytosol | 91.07 | 91.07 |
TraesCS3A01G405000.1 | Wheat | cytosol | 91.07 | 91.07 |
Bra024541.1-P | Field mustard | cytosol | 91.07 | 91.07 |
AT4G10040.1 | Thale cress | cytosol | 91.07 | 91.07 |
Bra037901.1-P | Field mustard | cytosol | 81.25 | 91.0 |
AT1G22840.1 | Thale cress | cytosol | 88.39 | 86.84 |
CDX99521 | Canola | cytosol | 81.25 | 85.85 |
HORVU3Hr1G090840.1 | Barley | mitochondrion, plastid | 91.07 | 68.92 |
GSMUA_Achr5P16900_001 | Banana | cytosol | 46.43 | 47.71 |
KRH16722 | Soybean | mitochondrion | 26.79 | 33.33 |
Protein Annotations
Gene3D:1.10.760.10 | MapMan:2.4.4.1 | InterPro:Cyt_c-like_dom | InterPro:Cyt_c-like_dom_sf | InterPro:Cyt_c_1A/1B | GO:GO:0003674 |
GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
GO:GO:0005739 | GO:GO:0005758 | GO:GO:0006091 | GO:GO:0006122 | GO:GO:0006123 | GO:GO:0006139 |
GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009055 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0020037 |
GO:GO:0022900 | GO:GO:0046872 | GO:GO:0055114 | GO:GO:0070469 | InterPro:IPR009056 | InterPro:IPR036909 |
UniProt:K4B1P8 | PFAM:PF00034 | PRINTS:PR00604 | PFscan:PS51007 | PANTHER:PTHR11961 | PANTHER:PTHR11961:SF9 |
SUPFAM:SSF46626 | EnsemblPlantsGene:Solyc01g103220.2 | EnsemblPlants:Solyc01g103220.2.1 | UniParc:UPI0002768220 | : | : |
Description
No Description!
Coordinates
chr1:+:91864284..91868742
Molecular Weight (calculated)
12139.5 Da
IEP (calculated)
9.952
GRAVY (calculated)
-0.645
Length
112 amino acids
Sequence
(BLAST)
(BLAST)
001: MASFAEAPPG NPKAGEKIFK TKCAQCHTVD KGAGHKQGPN LNGLFGRQSG TTAGYSYSNA NKNMAVNWGE NTLYDYLLNP KKYIPGTKMV FPGLKKPQER
101: ADLIAYLKEA TA
101: ADLIAYLKEA TA
001: MASFDEAPPG NPKAGEKIFR TKCAQCHTVE KGAGHKQGPN LNGLFGRQSG TTPGYSYSAA NKSMAVNWEE KTLYDYLLNP KKYIPGTKMV FPGLKKPQDR
101: ADLIAYLKEG TA
101: ADLIAYLKEG TA
Arabidopsis Description
CYTC-2CYTC-2 [Source:UniProtKB/TrEMBL;Acc:A0A178UZN3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.