Factsheet for Bra037901.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 5
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	mitochondrion
EpiLoc:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra025400.1-P
Bra033105.1-P
Bra036210.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G10040.1	Bra025400.1-P	AT3G29575.1	21798944
AT4G10040.1	Bra033105.1-P	AT3G29575.1	21798944
AT4G10040.1	Bra036210.1-P	AT3G29575.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX99521	Canola	cytosol	100.0	94.34
Bra000699.1-P	Field mustard	cytosol	100.0	89.29
AT4G10040.1	Thale cress	cytosol	97.0	86.61
Bra012346.1-P	Field mustard	cytosol	95.0	84.82
Bra024541.1-P	Field mustard	cytosol	95.0	84.82
VIT_18s0001g05810.t01	Wine grape	cytosol	95.0	84.82
KRH40245	Soybean	cytosol	93.0	83.04
PGSC0003DMT400063997	Potato	cytosol	92.0	82.14
KRH00982	Soybean	cytosol	92.0	82.14
GSMUA_Achr6P18470_001	Banana	cytosol	91.0	81.25
Solyc01g103220.2.1	Tomato	extracellular, plastid, unclear	91.0	81.25
Os05t0420600-01	Rice	mitochondrion	91.0	81.25
TraesCS3D01G400400.1	Wheat	cytosol	90.0	80.36
TraesCS3B01G438700.1	Wheat	cytosol	90.0	80.36
TraesCS3A01G405000.1	Wheat	cytosol	90.0	80.36
Zm00001d010236_P001	Maize	plastid	90.0	80.36
Zm00001d038218_P001	Maize	mitochondrion	90.0	80.36
Zm00001d042600_P001	Maize	cytosol	90.0	80.36
EES18250	Sorghum	cytosol	90.0	80.36
EES03996	Sorghum	cytosol	90.0	80.36
PGSC0003DMT400002609	Potato	cytosol	89.0	79.46
GSMUA_Achr5P01400_001	Banana	cytosol	89.0	79.46
GSMUA_Achr11P...	Banana	cytosol	89.0	78.76
Solyc11g042420.1.1	Tomato	cytosol	88.0	78.57
GSMUA_Achr7P23550_001	Banana	cytosol	88.0	78.57
TraesCS1A01G263300.1	Wheat	extracellular, unclear	88.0	77.88
TraesCS1D01G263400.1	Wheat	cytosol	88.0	77.88
TraesCS1B01G273900.1	Wheat	cytosol	73.0	64.6
HORVU3Hr1G090840.1	Barley	mitochondrion, plastid	90.0	60.81
Os04t0693050-01	Rice	plastid	57.0	60.0
HORVU1Hr1G063940.1	Barley	cytosol, mitochondrion, nucleus, plastid	88.0	52.38

Protein Annotations

Gene3D:1.10.760.10	MapMan:2.4.4.1	EnsemblPlantsGene:Bra037901	EnsemblPlants:Bra037901.1	EnsemblPlants:Bra037901.1-P	InterPro:Cyt_c-like_dom
InterPro:Cyt_c-like_dom_sf	InterPro:Cyt_c_1A/1B	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0020037	GO:GO:0022900
GO:GO:0046872	InterPro:IPR009056	InterPro:IPR036909	UniProt:M4F9Y7	PFAM:PF00034	PFscan:PS51007
PANTHER:PTHR11961	PANTHER:PTHR11961:SF9	SUPFAM:SSF46626	UniParc:UPI0002542414	:	:

Description

AT4G10040 (E=3e-032) CYTC-2 | CYTC-2 (cytochrome c-2); electron carrier/ heme binding / iron ion binding

Coordinates

chrA09:+:11456863..11457616

Molecular Weight (calculated)

11028.3 Da

IEP (calculated)

9.605

GRAVY (calculated)

-0.683

Length

100 amino acids

Sequence
(BLAST)

1: MASFDEAPPG NPKAGEKIFR TKCAQCHTVD KGAGHKQGTT PGYSYSAANK NMAVMWEEKT LYDYLLNPKK YIPGTKMVFP GLKKPQDRAD LIAYLKEGTA

Best Arabidopsis Sequence Match ( AT4G10040.1 )
(BLAST)

001: MASFDEAPPG NPKAGEKIFR TKCAQCHTVE KGAGHKQGPN LNGLFGRQSG TTPGYSYSAA NKSMAVNWEE KTLYDYLLNP KKYIPGTKMV FPGLKKPQDR
101: ADLIAYLKEG TA

Arabidopsis Description

CYTC-2CYTC-2 [Source:UniProtKB/TrEMBL;Acc:A0A178UZN3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.