Factsheet for PGSC0003DMT400063997

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 5
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	mitochondrion
EpiLoc:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

cytosol: 22313117
extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400003712
PGSC0003DMT400012712
PGSC0003DMT400036544
PGSC0003DMT400036545
PGSC0003DMT400089614
PGSC0003DMT400095238

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G22840.1	PGSC0003DMT400012712	AT4G08150.1	21798944
AT4G10040.1	PGSC0003DMT400003712	AT3G29575.1	21798944
AT4G10040.1	PGSC0003DMT400036544	AT3G29575.1	21798944
AT4G10040.1	PGSC0003DMT400036545	AT3G29575.1	21798944
AT4G10040.1	PGSC0003DMT400089614	AT3G29575.1	21798944
AT4G10040.1	PGSC0003DMT400095238	AT3G29575.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g103220.2.1	Tomato	extracellular, plastid, unclear	97.32	97.32
PGSC0003DMT400002609	Potato	cytosol	95.54	95.54
VIT_18s0001g05810.t01	Wine grape	cytosol	92.86	92.86
Bra000699.1-P	Field mustard	cytosol	92.86	92.86
Bra012346.1-P	Field mustard	cytosol	92.86	92.86
CDX90744	Canola	cytosol	92.86	92.86
CDY12506	Canola	cytosol	92.86	92.86
Os05t0420600-01	Rice	mitochondrion	92.86	92.86
CDY25756	Canola	cytosol	92.86	92.86
Bra037901.1-P	Field mustard	cytosol	82.14	92.0
Zm00001d042600_P001	Maize	cytosol	91.96	91.96
TraesCS3D01G400400.1	Wheat	cytosol	91.96	91.96
TraesCS3B01G438700.1	Wheat	cytosol	91.96	91.96
EES03996	Sorghum	cytosol	91.96	91.96
CDY21393	Canola	cytosol	91.96	91.96
CDY05083	Canola	cytosol	91.96	91.96
CDY04780	Canola	cytosol	91.96	91.96
Bra024541.1-P	Field mustard	cytosol	91.96	91.96
AT4G10040.1	Thale cress	cytosol	91.07	91.07
TraesCS3A01G405000.1	Wheat	cytosol	90.18	90.18
AT1G22840.1	Thale cress	cytosol	89.29	87.72
CDX99521	Canola	cytosol	82.14	86.79
HORVU3Hr1G090840.1	Barley	mitochondrion, plastid	90.18	68.24
GSMUA_Achr5P16900_001	Banana	cytosol	47.32	48.62
KRH16722	Soybean	mitochondrion	26.79	33.33

Protein Annotations

Gene3D:1.10.760.10	EntrezGene:102582196	MapMan:2.4.4.1	ProteinID:AFX66977	ProteinID:AFX66977.1	InterPro:Cyt_c-like_dom
InterPro:Cyt_c-like_dom_sf	InterPro:Cyt_c_1A/1B	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005758	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0016020	GO:GO:0020037
GO:GO:0022900	GO:GO:0046872	GO:GO:0055114	GO:GO:0070469	InterPro:IPR009056	InterPro:IPR036909
EMBL:JX683412	UniProt:M1CBK0	PFAM:PF00034	EnsemblPlantsGene:PGSC0003DMG400024876	PGSC:PGSC0003DMG400024876	EnsemblPlants:PGSC0003DMT400063997
PRINTS:PR00604	PFscan:PS51007	PANTHER:PTHR11961	PANTHER:PTHR11961:SF9	SUPFAM:SSF46626	UniParc:UPI000296EE68
RefSeq:XP_006349301.1	:	:	:	:	:

Description

Cytochrome c [Source:PGSC_GENE;Acc:PGSC0003DMG400024876]

Coordinates

chr1:+:79960770..79965524

Molecular Weight (calculated)

12098.4 Da

IEP (calculated)

9.952

GRAVY (calculated)

-0.639

Length

112 amino acids

Sequence
(BLAST)

001: MASFGEAPPG NPKAGEKIFK TKCAQCHTVD KGAGHKQGPN LNGLFGRQSG TTAGYSYSNA NKNMAVTWGE NTLYDYLLNP KKYIPGTKMV FPGLKKPQDR
101: ADLIAYLKEA TA

Best Arabidopsis Sequence Match ( AT4G10040.1 )
(BLAST)

001: MASFDEAPPG NPKAGEKIFR TKCAQCHTVE KGAGHKQGPN LNGLFGRQSG TTPGYSYSAA NKSMAVNWEE KTLYDYLLNP KKYIPGTKMV FPGLKKPQDR
101: ADLIAYLKEG TA

Arabidopsis Description

CYTC-2CYTC-2 [Source:UniProtKB/TrEMBL;Acc:A0A178UZN3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.