CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX85274
CDX86364
CDY00093
CDY04085
CDY19988
CDY44386

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G10040.1	CDX85274	AT3G29575.1	21798944
AT4G10040.1	CDX86364	AT3G29575.1	21798944
AT4G10040.1	CDY00093	AT3G29575.1	21798944
AT4G10040.1	CDY04085	AT3G29575.1	21798944
AT4G10040.1	CDY19988	AT3G29575.1	21798944
AT4G10040.1	CDY44386	AT3G29575.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90744	Canola	cytosol	99.11	99.11
AT4G10040.1	Thale cress	cytosol	96.43	96.43
CDY04780	Canola	cytosol	94.64	94.64
CDY12506	Canola	cytosol	94.64	94.64
CDY21393	Canola	cytosol	94.64	94.64
CDY25756	Canola	cytosol	94.64	94.64
VIT_18s0001g05810.t01	Wine grape	cytosol	94.64	94.64
CDX99521	Canola	cytosol	88.39	93.4
KRH40245	Soybean	cytosol	92.86	92.86
KRH00982	Soybean	cytosol	91.96	91.96
PGSC0003DMT400063997	Potato	cytosol	91.96	91.96
GSMUA_Achr6P18470_001	Banana	cytosol	91.07	91.07
Solyc01g103220.2.1	Tomato	extracellular, plastid, unclear	91.07	91.07
Os05t0420600-01	Rice	mitochondrion	91.07	91.07
Zm00001d042600_P001	Maize	cytosol	90.18	90.18
Zm00001d038218_P001	Maize	mitochondrion	90.18	90.18
Zm00001d010236_P001	Maize	plastid	90.18	90.18
EES03996	Sorghum	cytosol	90.18	90.18
TraesCS3D01G400400.1	Wheat	cytosol	90.18	90.18
TraesCS3B01G438700.1	Wheat	cytosol	90.18	90.18
EES18250	Sorghum	cytosol	90.18	90.18
PGSC0003DMT400002609	Potato	cytosol	89.29	89.29
TraesCS3A01G405000.1	Wheat	cytosol	89.29	89.29
GSMUA_Achr5P01400_001	Banana	cytosol	89.29	89.29
GSMUA_Achr11P...	Banana	cytosol	89.29	88.5
Solyc11g042420.1.1	Tomato	cytosol	88.39	88.39
GSMUA_Achr7P23550_001	Banana	cytosol	88.39	88.39
TraesCS1A01G263300.1	Wheat	extracellular, unclear	87.5	86.73
TraesCS1D01G263400.1	Wheat	cytosol	87.5	86.73
TraesCS1B01G273900.1	Wheat	cytosol	73.21	72.57
Os04t0693050-01	Rice	plastid	59.82	70.53
HORVU3Hr1G090840.1	Barley	mitochondrion, plastid	90.18	68.24
HORVU1Hr1G063940.1	Barley	cytosol, mitochondrion, nucleus, plastid	87.5	58.33

Protein Annotations

Gene3D:1.10.760.10	MapMan:2.4.4.1	GO:A0A078EZJ5	EnsemblPlants:CDY05083	ProteinID:CDY05083	ProteinID:CDY05083.1
InterPro:Cyt_c-like_dom	InterPro:Cyt_c-like_dom_sf	InterPro:Cyt_c_1A/1B	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0009055	GO:GO:0020037	EnsemblPlantsGene:GSBRNA2T00119846001	InterPro:IPR009056	InterPro:IPR036909	PFAM:PF00034
PRINTS:PR00604	PFscan:PS51007	PANTHER:PTHR11961	PANTHER:PTHR11961:SF9	SUPFAM:SSF46626	UniParc:UPI0004EB147A

Description

BnaC03g28810D

Coordinates

chrLK031959:+:534030..535773

Molecular Weight (calculated)

12283.7 Da

IEP (calculated)

9.794

GRAVY (calculated)

-0.682

Length

112 amino acids

Sequence
(BLAST)

001: MATFDEAPPG NPKAGEKIFR TKCAQCHTVD KGAGHKQGPN LNGLFGRQSG TTPGYSYSAA NKNMAVMWEE KTLYDYLLNP KKYIPGTKMV FPGLKKPQDR
101: ADLIAYLKEG TA

Best Arabidopsis Sequence Match ( AT4G10040.1 )
(BLAST)

001: MASFDEAPPG NPKAGEKIFR TKCAQCHTVE KGAGHKQGPN LNGLFGRQSG TTPGYSYSAA NKSMAVNWEE KTLYDYLLNP KKYIPGTKMV FPGLKKPQDR
101: ADLIAYLKEG TA

Arabidopsis Description

CYTC-2CYTC-2 [Source:UniProtKB/TrEMBL;Acc:A0A178UZN3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.