Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- mitochondrion 4
- cytosol 1
- plastid 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os05t0420600-01 | Rice | mitochondrion | 72.63 | 61.61 |
| AT4G10040.1 | Thale cress | cytosol | 71.58 | 60.71 |
| VIT_18s0001g05810.t01 | Wine grape | cytosol | 71.58 | 60.71 |
| TraesCS3D01G400400.1 | Wheat | cytosol | 71.58 | 60.71 |
| TraesCS3B01G438700.1 | Wheat | cytosol | 71.58 | 60.71 |
| CDX90744 | Canola | cytosol | 71.58 | 60.71 |
| Bra000699.1-P | Field mustard | cytosol | 71.58 | 60.71 |
| CDY05083 | Canola | cytosol | 70.53 | 59.82 |
| TraesCS3A01G405000.1 | Wheat | cytosol | 70.53 | 59.82 |
| CDY04780 | Canola | cytosol | 69.47 | 58.93 |
| CDY12506 | Canola | cytosol | 69.47 | 58.93 |
| CDY21393 | Canola | cytosol | 69.47 | 58.93 |
| CDY25756 | Canola | cytosol | 69.47 | 58.93 |
| Bra024541.1-P | Field mustard | cytosol | 69.47 | 58.93 |
| Bra012346.1-P | Field mustard | cytosol | 69.47 | 58.93 |
| AT1G22840.1 | Thale cress | cytosol | 70.53 | 58.77 |
| Bra037901.1-P | Field mustard | cytosol | 60.0 | 57.0 |
| CDX99521 | Canola | cytosol | 60.0 | 53.77 |
| Os01t0885000-01 | Rice | cytosol | 57.89 | 49.55 |
| HORVU3Hr1G090840.1 | Barley | mitochondrion, plastid | 73.68 | 47.3 |
| GSMUA_Achr5P16900_001 | Banana | cytosol | 53.68 | 46.79 |
Protein Annotations
| Gene3D:1.10.760.10 | MapMan:2.4.4.1 | UniProt:A0A0P0WGT0 | ProteinID:BAS91808.1 | InterPro:Cyt_c-like_dom | InterPro:Cyt_c-like_dom_sf |
| InterPro:Cyt_c_1A/1B | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0006091 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009055 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0020037 | GO:GO:0022900 | GO:GO:0046872 |
| GO:GO:0055114 | GO:GO:0070469 | InterPro:IPR009056 | InterPro:IPR036909 | EnsemblPlantsGene:Os04g0693050 | EnsemblPlants:Os04t0693050-01 |
| PFAM:PF00034 | PRINTS:PR00604 | PFscan:PS51007 | PANTHER:PTHR11961 | PANTHER:PTHR11961:SF9 | SUPFAM:SSF46626 |
| UniParc:UPI0003939EA0 | : | : | : | : | : |
Description
Similar to Cytochrome c. (Os04t0693050-01)
Coordinates
chr4:-:35481025..35481804
Molecular Weight (calculated)
10386.3 Da
IEP (calculated)
9.833
GRAVY (calculated)
-0.351
Length
95 amino acids
Sequence
(BLAST)
(BLAST)
1: MASFGVAPVG NAASGKKIFR TKCAQCHTVE RGGAHKQGPN LHGLFGRQSG TTPGYAYSTA NKNMAVVWEE GTLYDYLLNP KKVNYINYFS FIYSS
001: MASFDEAPPG NPKAGEKIFR TKCAQCHTVE KGAGHKQGPN LNGLFGRQSG TTPGYSYSAA NKSMAVNWEE KTLYDYLLNP KKYIPGTKMV FPGLKKPQDR
101: ADLIAYLKEG TA
101: ADLIAYLKEG TA
Arabidopsis Description
CYTC-2CYTC-2 [Source:UniProtKB/TrEMBL;Acc:A0A178UZN3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.