CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 5
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	mitochondrion
EpiLoc:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX83145
CDY21921
CDY22034
CDY22035
CDY22036
CDY22052
CDY34012
CDY50382
CDY50383
CDY52787
CDY52789
CDY65338
CDY68624
CDY69979

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G22840.1	CDY21921	AT4G01920.1	21798944
AT1G22840.1	CDY22034	AT4G01920.1	21798944
AT1G22840.1	CDY22035	AT4G01920.1	21798944
AT1G22840.1	CDY22036	AT4G01920.1	21798944
AT1G22840.1	CDY22052	AT4G01920.1	21798944
AT1G22840.1	CDY50382	AT4G01920.1	21798944
AT1G22840.1	CDY50383	AT4G01920.1	21798944
AT1G22840.1	CDY52787	AT4G01920.1	21798944
AT1G22840.1	CDY52789	AT4G01920.1	21798944
AT1G22840.1	CDY65338	AT4G01920.1	21798944
AT1G22840.1	CDY69979	AT4G01920.1	21798944
AT1G22840.1	CDX83145	AT4G08150.1	21798944
AT1G22840.1	CDY34012	AT4G08150.1	21798944
AT1G22840.1	CDY68624	AT4G08150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024541.1-P	Field mustard	cytosol	100.0	100.0
CDY21393	Canola	cytosol	100.0	100.0
CDY12506	Canola	cytosol	99.11	99.11
CDY25756	Canola	cytosol	99.11	99.11
CDX90744	Canola	cytosol	95.54	95.54
AT1G22840.1	Thale cress	cytosol	96.43	94.74
CDY05083	Canola	cytosol	94.64	94.64
KRH40245	Soybean	cytosol	93.75	93.75
VIT_18s0001g05810.t01	Wine grape	cytosol	92.86	92.86
KRH00982	Soybean	cytosol	92.86	92.86
EES18250	Sorghum	cytosol	91.96	91.96
Zm00001d038218_P001	Maize	mitochondrion	91.96	91.96
PGSC0003DMT400063997	Potato	cytosol	91.96	91.96
Zm00001d010236_P001	Maize	plastid	91.07	91.07
Solyc01g103220.2.1	Tomato	extracellular, plastid, unclear	91.07	91.07
GSMUA_Achr7P23550_001	Banana	cytosol	90.18	90.18
GSMUA_Achr6P18470_001	Banana	cytosol	90.18	90.18
PGSC0003DMT400002609	Potato	cytosol	90.18	90.18
GSMUA_Achr5P01400_001	Banana	cytosol	90.18	90.18
TraesCS3D01G400400.1	Wheat	cytosol	90.18	90.18
TraesCS3B01G438700.1	Wheat	cytosol	90.18	90.18
CDX99521	Canola	cytosol	84.82	89.62
TraesCS1A01G263300.1	Wheat	extracellular, unclear	90.18	89.38
TraesCS1D01G263400.1	Wheat	cytosol	90.18	89.38
Os05t0420600-01	Rice	mitochondrion	89.29	89.29
Solyc11g042420.1.1	Tomato	cytosol	89.29	89.29
Zm00001d042600_P001	Maize	cytosol	88.39	88.39
EES03996	Sorghum	cytosol	88.39	88.39
TraesCS3A01G405000.1	Wheat	cytosol	88.39	88.39
GSMUA_Achr11P...	Banana	cytosol	88.39	87.61
TraesCS1B01G273900.1	Wheat	cytosol	75.89	75.22
Os04t0693050-01	Rice	plastid	58.93	69.47
HORVU3Hr1G090840.1	Barley	mitochondrion, plastid	88.39	66.89
HORVU1Hr1G063940.1	Barley	cytosol, mitochondrion, nucleus, plastid	90.18	60.12

Protein Annotations

Gene3D:1.10.760.10	MapMan:2.4.4.1	GO:A0A078G9G4	UniProt:A0A078G9G4	EnsemblPlants:CDY04780	ProteinID:CDY04780
ProteinID:CDY04780.1	ProteinID:CDY21393.1	InterPro:Cyt_c-like_dom	InterPro:Cyt_c-like_dom_sf	InterPro:Cyt_c_1A/1B	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987
GO:GO:0016020	GO:GO:0020037	GO:GO:0022900	GO:GO:0046872	GO:GO:0055114	GO:GO:0070469
EnsemblPlantsGene:GSBRNA2T00119467001	InterPro:IPR009056	InterPro:IPR036909	PFAM:PF00034	PRINTS:PR00604	PFscan:PS51007
PANTHER:PTHR11961	PANTHER:PTHR11961:SF9	SUPFAM:SSF46626	UniParc:UPI0002542A7C	:	:

Description

BnaC05g18090DBnaA09g30340D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G9G4]

Coordinates

chrLK031957:-:670819..671934

Molecular Weight (calculated)

12258.5 Da

IEP (calculated)

9.779

GRAVY (calculated)

-0.749

Length

112 amino acids

Sequence
(BLAST)

001: MASFDEAPPG NSKAGEKIFR TKCAQCHTVD KGAGHKQGPN LNGLFGRQSG TTAGYSYSAA NKNKAVEWEE KTLYDYLLNP KKYIPGTKMV FPGLKKPQDR
101: ADLIAYLKES TA

Best Arabidopsis Sequence Match ( AT1G22840.1 )
(BLAST)

001: MASFDEAPPG NAKAGEKIFR TKCAQCHTVE AGAGHKQGPN LNGLFGRQSG TTAGYSYSAA NKNKAVEWEE KALYDYLLNP KKYIPGTKMV FPGLKKPQDR
101: ADLIAYLKES TAPK

Arabidopsis Description

CYTC-1CYTC-1 [Source:UniProtKB/TrEMBL;Acc:A0A178W284]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.