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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • cytosol 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX81261
CDX86029
CDX99153
CDY03408
CDY08844
CDY11652
CDY14517
CDY18692
CDY21814
CDY31298
CDY34322
CDY46357
CDY46828
CDY48156
CDY53953
CDY56082
CDY66333
CDY68857

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G01920.1 CDY11652 AT1G69810.1 21798944
AT4G01920.1 CDY56082 AT1G69810.1 21798944
AT4G01920.1 CDY68857 AT1G69810.1 21798944
AT4G01920.1 CDY46357 AT3G28715.1 21798944
AT4G01920.1 CDX86029 AT3G45640.1 21798944
AT4G01920.1 CDX99153 AT3G45640.1 21798944
AT4G01920.1 CDY21814 AT3G48210.1 21798944
AT4G01920.1 CDY48156 AT3G48210.1 21798944
AT4G01920.1 CDY53953 AT3G48210.1 21798944
AT4G01920.1 CDY66333 AT4G15700.1 21798944
AT4G01920.1 CDY03408 AT4G24900.1 21798944
AT4G01920.1 CDY34322 AT4G24900.1 21798944
AT4G01920.1 CDX81261 AT5G64850.1 21798944
AT4G01920.1 CDY08844 AT5G64850.1 21798944
AT4G01920.1 CDY14517 AT5G64850.1 21798944
AT4G01920.1 CDY18692 AT5G64850.1 21798944
AT4G01920.1 CDY31298 AT5G64850.1 21798944
AT4G01920.1 CDY46828 AT5G64850.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY52787 Canola nucleus 83.99 84.79
CDY22036 Canola cytosol 74.73 79.87
CDY65338 Canola cytosol 80.69 76.72
CDX97701 Canola cytosol 24.96 75.0
CDY52789 Canola cytosol 47.1 73.89
AT4G01925.1 Thale cress cytosol 32.03 72.86
CDY21921 Canola plastid 42.39 71.05
CDY22034 Canola endoplasmic reticulum 67.97 68.84
AT4G11540.1 Thale cress cytosol 55.89 67.81
AT4G01910.1 Thale cress cytosol 68.13 66.67
AT4G01930.1 Thale cress cytosol 68.13 66.56
AT4G01740.1 Thale cress cytosol 67.82 66.26
AT4G01920.1 Thale cress cytosol 67.5 65.35
AT4G01760.1 Thale cress cytosol 66.41 63.42
AT4G02190.1 Thale cress cytosol 65.31 63.13
AT4G11550.1 Thale cress cytosol 65.93 62.87
CDY50383 Canola cytosol 79.12 59.79
CDY22052 Canola nucleus 56.99 57.35
CDY22035 Canola cytosol 79.59 57.22
AT4G11390.2 Thale cress cytosol 46.15 53.85
CDY50382 Canola cytosol 75.98 48.79
AT4G02180.1 Thale cress cytosol 68.76 44.29
CDY51540 Canola nucleus 35.48 44.05
CDY52927 Canola cytosol 25.9 43.77
CDY30196 Canola cytosol 27.79 43.28
CDY28703 Canola cytosol 33.75 43.17
CDY06776 Canola cytosol 19.31 43.16
CDY58516 Canola nucleus 33.44 42.43
CDY41709 Canola peroxisome 34.85 42.21
CDY46706 Canola mitochondrion 35.16 42.03
CDY29992 Canola cytosol 17.27 41.98
CDY48718 Canola cytosol 24.33 41.78
CDY63456 Canola cytosol 25.75 41.52
CDY60784 Canola cytosol 21.82 41.37
CDY27940 Canola cytosol 36.58 41.31
CDY36839 Canola cytosol 38.46 40.5
CDX93183 Canola cytosol 42.07 40.24
CDY63460 Canola cytosol, mitochondrion 25.75 39.42
CDY64703 Canola cytosol 39.72 38.1
CDY63290 Canola cytosol 29.83 37.85
CDY27938 Canola cytosol 25.9 37.59
CDY30007 Canola cytosol, nucleus, plastid 39.09 37.44
CDY44574 Canola cytosol 28.26 37.34
CDY09240 Canola cytosol 27.63 37.05
CDY09238 Canola cytosol 27.63 37.05
CDX71062 Canola cytosol 36.26 36.9
CDX88733 Canola cytosol 36.11 36.86
CDY29993 Canola cytosol 35.48 36.63
CDX74184 Canola plasma membrane 23.08 35.85
CDY21132 Canola cytosol 34.22 35.62
CDY44167 Canola cytosol 27.32 35.37
CDX67463 Canola cytosol 25.75 35.34
CDX74183 Canola cytosol 18.52 34.3
CDY22883 Canola cytosol 35.01 34.15
CDY43524 Canola cytosol 26.69 33.6
CDY42579 Canola nucleus 13.97 32.48
CDY40661 Canola cytosol 38.15 31.89
CDY36353 Canola plastid 15.54 31.73
KRG95394 Soybean nucleus 25.27 28.4
KRH67075 Soybean nucleus 24.33 27.19
CDX82703 Canola cytosol 40.19 26.53
Protein Annotations
EnsemblPlants:CDY69979EnsemblPlantsGene:GSBRNA2T00093987001GO:A0A078JT19GO:GO:0003674GO:GO:0003824GO:GO:0047134
InterPro:DC1PFAM:PF03107ProteinID:CDY69979ProteinID:CDY69979.1SEG:segSUPFAM:SSF57889
UniParc:UPI0004EEA05AUniProt:A0A078JT19MapMan:35.2:::
Description
BnaA09g51580DBnaA09g51580D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JT19]
Coordinates
chrLK040836:+:975..2984
Molecular Weight (calculated)
73200.3 Da
IEP (calculated)
6.772
GRAVY (calculated)
-0.445
Length
637 amino acids
Sequence
(BLAST)
001: MESEGGVLLP LFHEHPMMPW NDLRRGDCCG RYESQSDGYY CKLCVFFVHK KCGNNELSQF IDHPSHPNHT LQLRLDKGGN ICDLCGWKIA KLCYRCQMCD
101: CDLDLHCAKY PPPDVIDNFE THPHKLTLVK DKTIFNSFHV DCVWHPATDH PTEVNHPYHS LHPLKLLTGP PPDYSDGKCR LCGTEIDKEL FYHCSSCNFT
201: LDMPCVLNPP QKTLVDPKVH DHQLTLLPRL DSFTCNACGL KGDRSPYACF DCGFMIHQDC LALPRVININ RHDHRVSRTS VLGDAAMNSV CGVCRKKVDW
301: TCGGFYCKRC PGYVFHSKCA TRNDVWNGKE LEGVPEEEEG TEPYVVIDEN TIQHFSHKEH YLRRIHGNGV LYENNKRCSA CIHPIGLQSF YGCMDCHFSL
401: HQKCAECPKK KRHVLHNERL TLVTNKELEV FSCDACYRRS NGFMYKDGGK EFDVLCGSIS EPFVHPSHPQ HPLYYIPTEE VEICNGCNSK EDYVLRCIED
501: DCRFVLCFKC ATLPQVVKHR VDDHPLSLCY GEEEEASGKY WCDICERETN PKEWFYTCKD QRASLHTECV LGDSAGLMPR SIAEIWCKSF EVELNNSVTR
601: PFCKGPCKDR CKYPIYFKLL GRTSETYLCS VSCIFWF
Best Arabidopsis Sequence Match ( AT4G01910.1 )
(BLAST)
001: MDSKGVVSLP LIHNHQMMPW NDLRKGDCCG HFEAISDGYY CKRCDFFVHK TCGDGVSEYI EHPSHPNHTL ELCSNLRFHC DLCGRRTNYL SYYCEICGFI
101: VDLHCAMYPP PEFIENSERH HHKLTLLKER IAAFDCDAKC GKISGNEFAY KCQECDLTFH VDCVWHPSEV YHPLEVNHSY HPSHPLKLHT GQRPDYSDGA
201: CRLCARKIDD RYFYHCSSCN FTLDMRCVLH PPQQSLLNLK AHDHQLTLLP RLDSFTCNAC GLKGDRSPYV CFQCGFMIHQ DCLSLPRLIN INRHDHRVSR
301: TSVLGVVNSV CEVCHRKVDW TCGGFSCQRC SGYVVHSKCA TNKDVWNGKE LEGVPEETED IKPFVVIDNN TIQHFSHKKH YLRLHVNGVL CDDKKRCRAC
401: THPICLQSFY GCMDCDFILH QNCAGFPRKR WHVLHNERLT LVSYEYDFFQ CQACNRFSNG FSYQYSGITF DVGCGSISEP FVHPSHPDHP LYYTLLDEET
501: KSSCNGCNKS SYSVLRCIED DCRFAICFKC ATFPQVVKHR VDDHPLSLCF DKEASGKYWC DICEKETNPE TWFYTCKDYR ASLHIKCVLG DFSWLMPGST
601: IDLSELSKVV LNNSISRPFC SGCKMHCIFP IILKIVGTSD KYFCSIECAF G
Arabidopsis Description
Cysteine/Histidine-rich C1 domain family protein [Source:UniProtKB/TrEMBL;Acc:Q9SYI8]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.