Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G01925.1 | Thale cress | cytosol | 33.64 | 78.21 |
| AT4G01930.1 | Thale cress | cytosol | 76.8 | 76.69 |
| AT4G01920.1 | Thale cress | cytosol | 73.12 | 72.34 |
| AT4G11540.1 | Thale cress | cytosol | 56.37 | 69.9 |
| AT4G01740.1 | Thale cress | cytosol | 68.97 | 68.86 |
| AT4G01760.1 | Thale cress | cytosol | 69.89 | 68.22 |
| CDY52787 | Canola | nucleus | 66.05 | 68.15 |
| CDY69979 | Canola | nucleus | 66.67 | 68.13 |
| CDY52789 | Canola | cytosol | 41.94 | 67.24 |
| AT4G02190.1 | Thale cress | cytosol | 67.74 | 66.92 |
| AT4G11550.1 | Thale cress | cytosol | 67.28 | 65.57 |
| CDY22036 | Canola | cytosol | 59.6 | 65.1 |
| CDY65338 | Canola | cytosol | 66.51 | 64.63 |
| CDY22034 | Canola | endoplasmic reticulum | 61.75 | 63.91 |
| CDY21921 | Canola | plastid | 35.94 | 61.58 |
| AT4G11390.2 | Thale cress | cytosol | 46.24 | 55.13 |
| CDY50383 | Canola | cytosol | 65.75 | 50.77 |
| AT1G65180.1 | Thale cress | nucleus | 50.69 | 50.54 |
| CDY22052 | Canola | nucleus | 48.85 | 50.24 |
| AT3G43890.1 | Thale cress | cytosol | 48.85 | 48.11 |
| AT4G02180.1 | Thale cress | cytosol | 72.35 | 47.62 |
| AT1G69150.1 | Thale cress | cytosol | 37.63 | 47.39 |
| CDY22035 | Canola | cytosol | 63.9 | 46.95 |
| AT1G58037.1 | Thale cress | cytosol | 23.96 | 45.48 |
| AT4G14980.1 | Thale cress | cytosol | 36.25 | 43.3 |
| AT5G22355.1 | Thale cress | cytosol | 43.93 | 43.07 |
| AT5G44770.1 | Thale cress | cytosol, nucleus, peroxisome | 35.33 | 42.51 |
| AT2G43220.1 | Thale cress | peroxisome | 34.87 | 42.19 |
| CDY50382 | Canola | cytosol | 64.06 | 42.04 |
| AT4G01350.1 | Thale cress | cytosol | 42.09 | 42.02 |
| AT5G59930.1 | Thale cress | cytosol, nucleus, plasma membrane | 42.24 | 41.92 |
| AT2G04500.1 | Thale cress | cytosol | 31.8 | 41.82 |
| AT3G06990.1 | Thale cress | nucleus | 34.56 | 41.74 |
| AT5G54050.1 | Thale cress | nucleus | 37.17 | 41.72 |
| AT5G59940.1 | Thale cress | cytosol | 41.63 | 41.63 |
| AT3G48400.1 | Thale cress | cytosol | 39.48 | 41.52 |
| AT4G16015.1 | Thale cress | cytosol | 34.1 | 41.5 |
| AT2G19660.2 | Thale cress | nucleus | 43.78 | 41.3 |
| AT5G37620.1 | Thale cress | cytosol | 41.32 | 41.26 |
| AT5G45730.1 | Thale cress | nucleus | 35.48 | 41.25 |
| AT3G27480.1 | Thale cress | cytosol, nucleus, peroxisome | 38.25 | 41.23 |
| AT3G46800.1 | Thale cress | cytosol | 43.01 | 41.06 |
| AT2G04680.1 | Thale cress | cytosol | 41.17 | 40.79 |
| AT3G46810.1 | Thale cress | cytosol | 42.7 | 40.52 |
| AT3G28650.1 | Thale cress | cytosol | 41.32 | 40.45 |
| AT3G27473.1 | Thale cress | cytosol | 41.01 | 40.33 |
| AT3G07000.1 | Thale cress | cytosol | 35.48 | 40.24 |
| AT3G27510.1 | Thale cress | cytosol | 27.19 | 40.23 |
| AT5G54030.1 | Thale cress | cytosol | 25.65 | 39.86 |
| AT5G59920.1 | Thale cress | cytosol | 43.01 | 39.44 |
| AT5G40320.1 | Thale cress | nucleus | 35.94 | 39.39 |
| AT2G19650.1 | Thale cress | cytosol | 40.71 | 38.86 |
| AT3G27490.1 | Thale cress | cytosol | 40.55 | 38.71 |
| AT4G13992.1 | Thale cress | mitochondrion | 38.1 | 38.63 |
| AT5G54020.2 | Thale cress | nucleus | 34.87 | 38.61 |
| AT3G45530.1 | Thale cress | cytosol | 40.86 | 38.44 |
| AT5G54040.1 | Thale cress | cytosol | 34.72 | 37.92 |
| AT5G29624.1 | Thale cress | cytosol | 28.42 | 37.91 |
| AT3G27500.1 | Thale cress | cytosol | 40.25 | 37.86 |
| AT3G45840.1 | Thale cress | mitochondrion, nucleus, peroxisome, vacuole | 34.1 | 37.56 |
| AT5G42840.1 | Thale cress | cytosol | 37.94 | 36.81 |
| KRH67075 | Soybean | nucleus | 23.35 | 26.67 |
| KRG95394 | Soybean | nucleus | 23.2 | 26.63 |
| Bra036288.1-P | Field mustard | cytosol, nucleus, plasma membrane | 68.36 | 26.6 |
Protein Annotations
| MapMan:35.2 | EntrezGene:827105 | ProteinID:AAD22653.1 | ProteinID:AEE82095.1 | ArrayExpress:AT4G01910 | EnsemblPlantsGene:AT4G01910 |
| RefSeq:AT4G01910 | TAIR:AT4G01910 | RefSeq:AT4G01910-TAIR-G | EnsemblPlants:AT4G01910.1 | TAIR:AT4G01910.1 | Unigene:At.3851 |
| ProteinID:CAB80684.1 | InterPro:DC1 | RefSeq:NP_192100.1 | PFAM:PF03107 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0004507 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009029 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0020137 | UniProt:Q9SYI8 | SUPFAM:SSF57889 | UniParc:UPI00000A17A3 |
Description
Cysteine/Histidine-rich C1 domain family protein [Source:UniProtKB/TrEMBL;Acc:Q9SYI8]
Coordinates
chr4:-:824555..826857
Molecular Weight (calculated)
74848.2 Da
IEP (calculated)
7.072
GRAVY (calculated)
-0.324
Length
651 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSKGVVSLP LIHNHQMMPW NDLRKGDCCG HFEAISDGYY CKRCDFFVHK TCGDGVSEYI EHPSHPNHTL ELCSNLRFHC DLCGRRTNYL SYYCEICGFI
101: VDLHCAMYPP PEFIENSERH HHKLTLLKER IAAFDCDAKC GKISGNEFAY KCQECDLTFH VDCVWHPSEV YHPLEVNHSY HPSHPLKLHT GQRPDYSDGA
201: CRLCARKIDD RYFYHCSSCN FTLDMRCVLH PPQQSLLNLK AHDHQLTLLP RLDSFTCNAC GLKGDRSPYV CFQCGFMIHQ DCLSLPRLIN INRHDHRVSR
301: TSVLGVVNSV CEVCHRKVDW TCGGFSCQRC SGYVVHSKCA TNKDVWNGKE LEGVPEETED IKPFVVIDNN TIQHFSHKKH YLRLHVNGVL CDDKKRCRAC
401: THPICLQSFY GCMDCDFILH QNCAGFPRKR WHVLHNERLT LVSYEYDFFQ CQACNRFSNG FSYQYSGITF DVGCGSISEP FVHPSHPDHP LYYTLLDEET
501: KSSCNGCNKS SYSVLRCIED DCRFAICFKC ATFPQVVKHR VDDHPLSLCF DKEASGKYWC DICEKETNPE TWFYTCKDYR ASLHIKCVLG DFSWLMPGST
601: IDLSELSKVV LNNSISRPFC SGCKMHCIFP IILKIVGTSD KYFCSIECAF G
101: VDLHCAMYPP PEFIENSERH HHKLTLLKER IAAFDCDAKC GKISGNEFAY KCQECDLTFH VDCVWHPSEV YHPLEVNHSY HPSHPLKLHT GQRPDYSDGA
201: CRLCARKIDD RYFYHCSSCN FTLDMRCVLH PPQQSLLNLK AHDHQLTLLP RLDSFTCNAC GLKGDRSPYV CFQCGFMIHQ DCLSLPRLIN INRHDHRVSR
301: TSVLGVVNSV CEVCHRKVDW TCGGFSCQRC SGYVVHSKCA TNKDVWNGKE LEGVPEETED IKPFVVIDNN TIQHFSHKKH YLRLHVNGVL CDDKKRCRAC
401: THPICLQSFY GCMDCDFILH QNCAGFPRKR WHVLHNERLT LVSYEYDFFQ CQACNRFSNG FSYQYSGITF DVGCGSISEP FVHPSHPDHP LYYTLLDEET
501: KSSCNGCNKS SYSVLRCIED DCRFAICFKC ATFPQVVKHR VDDHPLSLCF DKEASGKYWC DICEKETNPE TWFYTCKDYR ASLHIKCVLG DFSWLMPGST
601: IDLSELSKVV LNNSISRPFC SGCKMHCIFP IILKIVGTSD KYFCSIECAF G
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.