Subcellular Localization
min:
: max
Winner_takes_all: peroxisome
Predictor Summary:
Predictor Summary:
- nucleus 1
- peroxisome 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY29992 | Canola | cytosol | 22.68 | 46.56 |
| Bra040143.1-P | Field mustard | nucleus | 51.86 | 45.59 |
| CDY21132 | Canola | cytosol | 51.86 | 45.59 |
| CDY29993 | Canola | cytosol | 52.23 | 45.54 |
| AT4G01925.1 | Thale cress | cytosol | 22.49 | 43.21 |
| AT1G58037.1 | Thale cress | cytosol | 27.14 | 42.57 |
| AT5G45730.1 | Thale cress | nucleus | 42.57 | 40.89 |
| AT2G04500.1 | Thale cress | cytosol | 36.99 | 40.2 |
| AT4G16015.1 | Thale cress | cytosol | 39.22 | 39.44 |
| AT3G06990.1 | Thale cress | nucleus | 39.41 | 39.33 |
| AT4G11540.1 | Thale cress | cytosol | 38.1 | 39.05 |
| AT4G14980.1 | Thale cress | cytosol | 39.41 | 38.9 |
| AT3G27510.1 | Thale cress | cytosol | 31.78 | 38.86 |
| AT5G44770.1 | Thale cress | cytosol, nucleus, peroxisome | 38.85 | 38.63 |
| AT5G54030.1 | Thale cress | cytosol | 29.74 | 38.19 |
| AT3G07000.1 | Thale cress | cytosol | 40.52 | 37.98 |
| AT5G54050.1 | Thale cress | nucleus | 40.89 | 37.93 |
| AT5G54040.1 | Thale cress | cytosol | 41.26 | 37.25 |
| AT5G29624.1 | Thale cress | cytosol | 33.27 | 36.68 |
| AT5G54020.2 | Thale cress | nucleus | 39.03 | 35.71 |
| AT1G69150.1 | Thale cress | cytosol | 33.83 | 35.2 |
| AT5G40320.1 | Thale cress | nucleus | 38.66 | 35.02 |
| AT4G01910.1 | Thale cress | cytosol | 42.19 | 34.87 |
| AT4G01930.1 | Thale cress | cytosol | 41.82 | 34.51 |
| AT5G22355.1 | Thale cress | cytosol | 42.57 | 34.49 |
| AT1G65180.1 | Thale cress | nucleus | 41.82 | 34.46 |
| AT4G11550.1 | Thale cress | cytosol | 42.75 | 34.43 |
| AT4G02190.1 | Thale cress | cytosol | 41.82 | 34.14 |
| AT5G37620.1 | Thale cress | cytosol | 41.26 | 34.05 |
| AT3G43890.1 | Thale cress | cytosol | 41.64 | 33.89 |
| AT3G27480.1 | Thale cress | cytosol, nucleus, peroxisome | 37.73 | 33.61 |
| AT4G01760.1 | Thale cress | cytosol | 41.45 | 33.43 |
| AT3G27473.1 | Thale cress | cytosol | 41.08 | 33.38 |
| AT4G13992.1 | Thale cress | mitochondrion | 39.78 | 33.33 |
| AT2G04680.1 | Thale cress | cytosol | 40.71 | 33.33 |
| AT3G28650.1 | Thale cress | cytosol | 40.89 | 33.08 |
| AT4G11390.2 | Thale cress | cytosol | 33.46 | 32.97 |
| AT2G19660.2 | Thale cress | nucleus | 42.19 | 32.9 |
| AT3G46800.1 | Thale cress | cytosol | 41.64 | 32.84 |
| AT3G27490.1 | Thale cress | cytosol | 41.45 | 32.7 |
| AT5G59930.1 | Thale cress | cytosol, nucleus, plasma membrane | 39.59 | 32.47 |
| AT3G48400.1 | Thale cress | cytosol | 37.17 | 32.31 |
| AT4G01920.1 | Thale cress | cytosol | 39.41 | 32.22 |
| AT3G46810.1 | Thale cress | cytosol | 41.08 | 32.22 |
| AT2G19650.1 | Thale cress | cytosol | 40.52 | 31.96 |
| AT4G01740.1 | Thale cress | cytosol | 38.48 | 31.75 |
| AT3G45530.1 | Thale cress | cytosol | 40.71 | 31.65 |
| AT5G59940.1 | Thale cress | cytosol | 37.73 | 31.18 |
| AT4G01350.1 | Thale cress | cytosol | 37.73 | 31.14 |
| AT3G27500.1 | Thale cress | cytosol | 39.96 | 31.07 |
| AT5G42840.1 | Thale cress | cytosol | 38.66 | 31.0 |
| AT3G45840.1 | Thale cress | mitochondrion, nucleus, peroxisome, vacuole | 32.34 | 29.44 |
| AT5G59920.1 | Thale cress | cytosol | 38.66 | 29.3 |
| KRG95394 | Soybean | nucleus | 23.61 | 22.4 |
| AT4G02180.1 | Thale cress | cytosol | 40.89 | 22.24 |
| KRH67075 | Soybean | nucleus | 22.68 | 21.4 |
Protein Annotations
| MapMan:35.2 | EntrezGene:818923 | UniProt:A0A178VXH5 | ProteinID:AAC64311.1 | ProteinID:AAX55159.1 | ProteinID:AEC10231.1 |
| ArrayExpress:AT2G43220 | EnsemblPlantsGene:AT2G43220 | RefSeq:AT2G43220 | TAIR:AT2G43220 | RefSeq:AT2G43220-TAIR-G | EnsemblPlants:AT2G43220.1 |
| TAIR:AT2G43220.1 | InterPro:DC1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0035556 | GO:GO:0046872 | RefSeq:NP_181851.1 | ProteinID:OAP11059.1 | PFAM:PF03107 | PO:PO:0000084 |
| PANTHER:PTHR32410 | UniProt:Q9ZW73 | SMART:SM00249 | SUPFAM:SSF57889 | UniParc:UPI00000A4C93 | InterPro:Znf_PHD |
Description
Cysteine/Histidine-rich C1 domain family protein [Source:UniProtKB/TrEMBL;Acc:Q9ZW73]
Coordinates
chr2:+:17963747..17966211
Molecular Weight (calculated)
62440.4 Da
IEP (calculated)
6.862
GRAVY (calculated)
-0.414
Length
538 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKTLDLFWH EHPLYEKYRM FTCQECHRSA IPFFEVFYGC FRCNIKWHPY CVPRSTKNIN HPCHPNHPLE VLLQGPPSYS DEKCSLCQRK LSNFVYHCKL
101: CNFSIDMECG NRPPPHKVDH PKCHEHALTL MGREVSFTCN ACGTHGERNP YVCLPCSVMF HYDCIDLPHV ININRHDHRI SHSYPLKRGN WVCEICRQDI
201: NTTYGGYSCN KCPDFFVHSK CATRKDVWDG TELEGIPEEV VDVAPFEVIE EGVIYHFSHE KHNLFLIEDV FIDGAEDMHC EACARPVSSE KHYKCVECKF
301: ILHEECANLP LTKRHGLSTG IFYLRFGKDF SEQNFSCDAC NRDGRGFSYK DEEGVVLDVL CASLSFFKHP KLHPHTLFLT TIDRGTCLAC GENKLNVLRC
401: VDCDYSLDYK CATLPLVIKH RCDTHYLVLR SGEEAPEGKY WCEICEAETN PERWFYTCDD CGVVCHIECV TGDFLNIKPG IIMKNRENKF EVGFNDHDSR
501: PKCTDCGSRC RFPRFFKVTR KNIEYYYCSK ACFQNAKF
101: CNFSIDMECG NRPPPHKVDH PKCHEHALTL MGREVSFTCN ACGTHGERNP YVCLPCSVMF HYDCIDLPHV ININRHDHRI SHSYPLKRGN WVCEICRQDI
201: NTTYGGYSCN KCPDFFVHSK CATRKDVWDG TELEGIPEEV VDVAPFEVIE EGVIYHFSHE KHNLFLIEDV FIDGAEDMHC EACARPVSSE KHYKCVECKF
301: ILHEECANLP LTKRHGLSTG IFYLRFGKDF SEQNFSCDAC NRDGRGFSYK DEEGVVLDVL CASLSFFKHP KLHPHTLFLT TIDRGTCLAC GENKLNVLRC
401: VDCDYSLDYK CATLPLVIKH RCDTHYLVLR SGEEAPEGKY WCEICEAETN PERWFYTCDD CGVVCHIECV TGDFLNIKPG IIMKNRENKF EVGFNDHDSR
501: PKCTDCGSRC RFPRFFKVTR KNIEYYYCSK ACFQNAKF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.