Factsheet for AT5G59930.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G59940.1	Thale cress	cytosol	63.57	64.06
AT4G01350.1	Thale cress	cytosol	59.6	59.97
AT5G59920.1	Thale cress	cytosol	60.67	56.06
CDY30007	Canola	cytosol, nucleus, plastid	53.96	53.23
CDY64703	Canola	cytosol	52.9	52.26
AT5G22355.1	Thale cress	cytosol	52.9	52.26
CDX74184	Canola	plasma membrane	32.62	52.2
CDX74183	Canola	cytosol	27.29	52.03
CDY63290	Canola	cytosol	38.57	50.4
Bra001113.1-P	Field mustard	cytosol	33.38	47.51
AT4G01925.1	Thale cress	cytosol	19.66	46.07
AT3G48400.1	Thale cress	cytosol	43.45	46.04
AT3G45840.1	Thale cress	mitochondrion, nucleus, peroxisome, vacuole	40.7	45.18
CDY40661	Canola	cytosol	51.68	44.49
AT4G11540.1	Thale cress	cytosol	34.91	43.62
AT4G01910.1	Thale cress	cytosol	41.92	42.24
AT4G02190.1	Thale cress	cytosol	41.46	41.27
AT3G46810.1	Thale cress	cytosol	43.14	41.25
AT4G01930.1	Thale cress	cytosol	40.7	40.95
AT1G58037.1	Thale cress	cytosol	21.04	40.23
AT4G11550.1	Thale cress	cytosol	40.85	40.12
AT2G43220.1	Thale cress	peroxisome	32.47	39.59
AT2G04680.1	Thale cress	cytosol	39.63	39.57
AT3G46800.1	Thale cress	cytosol	41.01	39.44
AT4G01760.1	Thale cress	cytosol	40.09	39.43
AT4G01920.1	Thale cress	cytosol	39.48	39.36
AT4G01740.1	Thale cress	cytosol	39.02	39.26
AT1G65180.1	Thale cress	nucleus	39.02	39.2
AT2G19660.2	Thale cress	nucleus	41.16	39.13
AT5G45730.1	Thale cress	nucleus	33.38	39.11
AT3G27510.1	Thale cress	cytosol	26.07	38.86
AT5G37620.1	Thale cress	cytosol	38.57	38.8
AT2G19650.1	Thale cress	cytosol	40.09	38.56
AT4G16015.1	Thale cress	cytosol	31.4	38.5
AT3G07000.1	Thale cress	cytosol	33.69	38.5
AT5G44770.1	Thale cress	cytosol, nucleus, peroxisome	31.71	38.45
AT5G54030.1	Thale cress	cytosol	24.54	38.42
AT3G06990.1	Thale cress	nucleus	31.55	38.4
AT5G40320.1	Thale cress	nucleus	34.6	38.22
AT5G54050.1	Thale cress	nucleus	33.54	37.93
AT4G14980.1	Thale cress	cytosol	31.4	37.8
AT2G04500.1	Thale cress	cytosol	28.2	37.37
AT3G43890.1	Thale cress	cytosol	37.2	36.91
AT3G27480.1	Thale cress	cytosol, nucleus, peroxisome	33.84	36.76
AT5G54040.1	Thale cress	cytosol	33.38	36.74
AT1G69150.1	Thale cress	cytosol	28.81	36.56
AT3G28650.1	Thale cress	cytosol	37.04	36.54
AT5G29624.1	Thale cress	cytosol	27.13	36.48
AT5G54020.2	Thale cress	nucleus	32.62	36.39
AT3G27473.1	Thale cress	cytosol	36.28	35.95
AT4G13992.1	Thale cress	mitochondrion	34.76	35.51
AT3G45530.1	Thale cress	cytosol	37.04	35.12
AT5G42840.1	Thale cress	cytosol	35.52	34.72
AT3G27500.1	Thale cress	cytosol	36.43	34.54
AT4G11390.2	Thale cress	cytosol	28.51	34.25
AT3G27490.1	Thale cress	cytosol	35.06	33.72
AT4G02180.1	Thale cress	cytosol	40.7	27.0
KRG95394	Soybean	nucleus	22.26	25.75
KRH67075	Soybean	nucleus	21.04	24.21

Protein Annotations

MapMan:35.2	EntrezGene:836115	ProteinID:AED97252.1	ArrayExpress:AT5G59930	EnsemblPlantsGene:AT5G59930	RefSeq:AT5G59930
TAIR:AT5G59930	RefSeq:AT5G59930-TAIR-G	EnsemblPlants:AT5G59930.1	TAIR:AT5G59930.1	ProteinID:BAB08361.1	InterPro:DC1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	GO:GO:0035556	GO:GO:0046872	InterPro:IPR002219
RefSeq:NP_200801.1	InterPro:PE/DAG-bd	PFAM:PF03107	PO:PO:0009005	UniProt:Q9FJE3	SMART:SM00109
SMART:SM00249	SUPFAM:SSF57889	UniParc:UPI00000A19CB	InterPro:Znf_PHD	:	:

Description

Cysteine/Histidine-rich C1 domain family protein [Source:UniProtKB/TrEMBL;Acc:Q9FJE3]

Coordinates

chr5:+:24134231..24136558

Molecular Weight (calculated)

74891.6 Da

IEP (calculated)

7.207

GRAVY (calculated)

-0.104

Length

656 amino acids

Sequence
(BLAST)

001: MDTSAVQLPF RDYSLQPAPR YINARCHICS VTGAIYNGYF CNDPIVWMHK ECVELPSEIN HLFHPQHPLL LTYEEGWWSC FCALCGETKP AKYFYSCSTC
101: KIKVDLTCGM NPPPPAIEHP ICHDHPLVFL KKRQEKTPCE VCKNRILGSS YSCLGCELYF HVGCIHLSKE VNHPCHSDHP LMLVESESLT DNDKKTCFLC
201: GQQPHGILYH CSICNFTLCI GCIKSPPPLV VENVKTHKHP LTFFPRGVYC TCNVCGVKGL ILSYMCLQCG FAVHCSCVDL PQVININRHD HRISFTQHLG
301: PGYLNCGVCR RSVCQFNGAY SCLVCPNYAV HSRCATRYDI WDGVELEGKA ENIEDIAPFK VVGDDLIRHF SHSKHSLRLH KNNIIYDDST RCEACGHPVE
401: FGRIYNCEEC CFILHEKCAN LPMKKRLVFS TLPFLLLGPG NDVCKVLDCK LCGMFFTGFE YKSQERRQSD IDVHCGSLTE PFVHDGHLHP LYFDQKQKEL
501: PCNACQKTIR DYMLCCADCD FNLCLWCASL PKKIRHSNDE HILTLCCGEE ANGKYWCDIC EAELDPSKWF YTCFGCGGTL HVECVLGDFS RLMPGCTIDY
601: RVYTVEVVFN NHNTRPMCSR CHSRCKVSVI LKFREGNIVY FFCSRSCFLM HFSYYL

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.