Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G06990.1 | Thale cress | nucleus | 74.91 | 79.78 |
| AT1G58037.1 | Thale cress | cytosol | 39.2 | 65.6 |
| AT5G45730.1 | Thale cress | nucleus | 62.89 | 64.46 |
| AT5G44770.1 | Thale cress | cytosol, nucleus, peroxisome | 45.3 | 48.06 |
| AT4G01925.1 | Thale cress | cytosol | 23.17 | 47.5 |
| AT2G04500.1 | Thale cress | cytosol | 40.59 | 47.07 |
| AT4G14980.1 | Thale cress | cytosol | 44.43 | 46.79 |
| AT5G54030.1 | Thale cress | cytosol | 32.93 | 45.11 |
| AT5G54020.2 | Thale cress | nucleus | 45.47 | 44.39 |
| AT5G54050.1 | Thale cress | nucleus | 44.77 | 44.31 |
| AT5G54040.1 | Thale cress | cytosol | 44.95 | 43.29 |
| AT5G29624.1 | Thale cress | cytosol | 35.19 | 41.39 |
| AT2G43220.1 | Thale cress | peroxisome | 37.98 | 40.52 |
| AT4G16015.1 | Thale cress | cytosol | 37.28 | 40.0 |
| AT3G27510.1 | Thale cress | cytosol | 30.31 | 39.55 |
| AT4G11540.1 | Thale cress | cytosol | 35.89 | 39.24 |
| AT4G01930.1 | Thale cress | cytosol | 41.46 | 36.5 |
| AT5G40320.1 | Thale cress | nucleus | 37.63 | 36.36 |
| AT4G11550.1 | Thale cress | cytosol | 42.16 | 36.23 |
| AT5G22355.1 | Thale cress | cytosol | 41.64 | 35.99 |
| AT4G01740.1 | Thale cress | cytosol | 40.77 | 35.89 |
| AT4G01910.1 | Thale cress | cytosol | 40.24 | 35.48 |
| AT4G01920.1 | Thale cress | cytosol | 40.59 | 35.41 |
| AT4G01760.1 | Thale cress | cytosol | 40.77 | 35.08 |
| AT4G11390.2 | Thale cress | cytosol | 33.1 | 34.8 |
| AT4G02190.1 | Thale cress | cytosol | 39.9 | 34.75 |
| AT3G27473.1 | Thale cress | cytosol | 40.07 | 34.74 |
| AT1G65180.1 | Thale cress | nucleus | 39.37 | 34.61 |
| AT1G69150.1 | Thale cress | cytosol | 31.01 | 34.43 |
| AT3G43890.1 | Thale cress | cytosol | 39.55 | 34.34 |
| AT3G27480.1 | Thale cress | cytosol, nucleus, peroxisome | 35.89 | 34.11 |
| AT3G46800.1 | Thale cress | cytosol | 40.24 | 33.87 |
| AT2G04680.1 | Thale cress | cytosol | 38.68 | 33.79 |
| AT5G59930.1 | Thale cress | cytosol, nucleus, plasma membrane | 38.5 | 33.69 |
| AT3G46810.1 | Thale cress | cytosol | 40.24 | 33.67 |
| AT5G37620.1 | Thale cress | cytosol | 38.15 | 33.59 |
| AT3G27490.1 | Thale cress | cytosol | 39.9 | 33.58 |
| AT3G28650.1 | Thale cress | cytosol | 38.85 | 33.53 |
| AT2G19650.1 | Thale cress | cytosol | 39.55 | 33.28 |
| AT3G48400.1 | Thale cress | cytosol | 35.71 | 33.12 |
| AT4G13992.1 | Thale cress | mitochondrion | 36.93 | 33.02 |
| AT4G01350.1 | Thale cress | cytosol | 37.46 | 32.98 |
| AT2G19660.2 | Thale cress | nucleus | 39.55 | 32.9 |
| AT5G42840.1 | Thale cress | cytosol | 38.15 | 32.64 |
| AT5G59940.1 | Thale cress | cytosol | 36.76 | 32.41 |
| AT3G45530.1 | Thale cress | cytosol | 38.68 | 32.08 |
| AT3G27500.1 | Thale cress | cytosol | 38.5 | 31.94 |
| AT5G59920.1 | Thale cress | cytosol | 39.37 | 31.83 |
| AT3G45840.1 | Thale cress | mitochondrion, nucleus, peroxisome, vacuole | 29.79 | 28.93 |
| KRG95394 | Soybean | nucleus | 24.56 | 24.87 |
| KRH67075 | Soybean | nucleus | 23.52 | 23.68 |
| AT4G02180.1 | Thale cress | cytosol | 40.59 | 23.56 |
Protein Annotations
| MapMan:35.2 | EntrezGene:819885 | UniProt:A0A178VG40 | ProteinID:AAF27004.1 | ProteinID:AEE74486.1 | ArrayExpress:AT3G07000 |
| EnsemblPlantsGene:AT3G07000 | RefSeq:AT3G07000 | TAIR:AT3G07000 | RefSeq:AT3G07000-TAIR-G | EnsemblPlants:AT3G07000.1 | TAIR:AT3G07000.1 |
| EMBL:BT030350 | InterPro:DC1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 | RefSeq:NP_187356.1 |
| ProteinID:OAP04638.1 | PFAM:PF03107 | PO:PO:0009005 | PO:PO:0020100 | PANTHER:PTHR32410 | UniProt:Q9M8Z9 |
| SMART:SM00249 | SUPFAM:SSF57889 | UniParc:UPI00000A77CB | InterPro:Znf_PHD | SEG:seg | : |
Description
At3g07000 [Source:UniProtKB/TrEMBL;Acc:Q9M8Z9]
Coordinates
chr3:+:2209405..2211515
Molecular Weight (calculated)
66278.2 Da
IEP (calculated)
6.772
GRAVY (calculated)
-0.391
Length
574 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPITDQPMD QPKQKVKIPC NHMLLYIHLT QSYSYCAVCN GDYGLCYYCS RCNFQAHSEC IEWPDTIDHP SHSRHPLKKV SPGTIDYTDG KCHFCREELV
101: DPMYHCSLCN FSIDVNCWRH PPQRTIYQPK SHEHTFTLMP RKITFTCNAC GMLGDCNPYF CFECGFMLHK DCIDLPRVIN INRHDHRISR TYHLGHGDWG
201: SCGVCRKEID WSLGAYSCKR CPNYAVHSKC AIREDVWNGE ELEDVPEEEE EIEDPYKVVN DKEIIHFCHE EHNLRLGGDD DVTGYEKMLC DACITPISSD
301: PFFKCVQCEF FLHKVCASLP RRKRNIMHTE KLDLQVTKAG EYNKCISCRK IFDGFRYCSR FEKFDVRCGS ISEPFHHELH PHPLYHILSA AEKLKLCGAC
401: GKYLHYVLSC TVCEFNLGMD CATLPRKVRH ICDAHDLSLH HVPGNSKGQQ LWCDSCEGKL DPSVWFYGCD DCGSTLHIKC VLGDFNHLKP GKKYGEAELV
501: VNDGMTRPFC ISCKKRCSFP SFLKATCPNT LCEQRWGFPS FLKAASPDSF VLFACSMDCA YDKYFMLWFY EVDY
101: DPMYHCSLCN FSIDVNCWRH PPQRTIYQPK SHEHTFTLMP RKITFTCNAC GMLGDCNPYF CFECGFMLHK DCIDLPRVIN INRHDHRISR TYHLGHGDWG
201: SCGVCRKEID WSLGAYSCKR CPNYAVHSKC AIREDVWNGE ELEDVPEEEE EIEDPYKVVN DKEIIHFCHE EHNLRLGGDD DVTGYEKMLC DACITPISSD
301: PFFKCVQCEF FLHKVCASLP RRKRNIMHTE KLDLQVTKAG EYNKCISCRK IFDGFRYCSR FEKFDVRCGS ISEPFHHELH PHPLYHILSA AEKLKLCGAC
401: GKYLHYVLSC TVCEFNLGMD CATLPRKVRH ICDAHDLSLH HVPGNSKGQQ LWCDSCEGKL DPSVWFYGCD DCGSTLHIKC VLGDFNHLKP GKKYGEAELV
501: VNDGMTRPFC ISCKKRCSFP SFLKATCPNT LCEQRWGFPS FLKAASPDSF VLFACSMDCA YDKYFMLWFY EVDY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.