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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • plastid 2
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus, plastid
BaCelLo:nucleus
iPSORT:plastid
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY41709 Canola peroxisome 44.73 56.46
AT5G59940.1 Thale cress cytosol 52.41 53.46
AT3G48400.1 Thale cress cytosol 49.4 52.99
AT5G59930.1 Thale cress cytosol, nucleus, plasma membrane 52.26 52.9
AT4G01350.1 Thale cress cytosol 51.66 52.61
AT5G59920.1 Thale cress cytosol 53.31 49.86
AT4G01925.1 Thale cress cytosol 20.48 48.57
AT3G45840.1 Thale cress mitochondrion, nucleus, peroxisome, vacuole 42.17 47.38
AT4G11540.1 Thale cress cytosol 36.75 46.48
AT1G58037.1 Thale cress cytosol 23.04 44.61
AT3G46810.1 Thale cress cytosol 46.08 44.61
AT5G37620.1 Thale cress cytosol 43.52 44.33
AT2G04680.1 Thale cress cytosol 43.83 44.29
AT4G01910.1 Thale cress cytosol 43.07 43.93
AT3G46800.1 Thale cress cytosol 45.03 43.84
AT4G01930.1 Thale cress cytosol 42.92 43.71
AT2G19660.2 Thale cress nucleus 45.33 43.62
AT4G01920.1 Thale cress cytosol 43.07 43.47
AT5G54030.1 Thale cress cytosol 27.41 43.44
AT4G01740.1 Thale cress cytosol 42.47 43.25
AT3G06990.1 Thale cress nucleus 35.09 43.23
AT2G19650.1 Thale cress cytosol 44.13 42.96
AT5G44770.1 Thale cress cytosol, nucleus, peroxisome 34.94 42.88
AT4G11550.1 Thale cress cytosol 43.07 42.81
AT4G02190.1 Thale cress cytosol 42.47 42.79
AT4G14980.1 Thale cress cytosol 34.94 42.57
AT2G43220.1 Thale cress peroxisome 34.49 42.57
AT4G01760.1 Thale cress cytosol 42.62 42.43
AT5G40320.1 Thale cress nucleus 37.95 42.42
AT3G27510.1 Thale cress cytosol 27.86 42.05
AT5G45730.1 Thale cress nucleus 35.39 41.96
AT1G65180.1 Thale cress nucleus 41.27 41.96
AT4G16015.1 Thale cress cytosol 33.73 41.87
AT5G54020.2 Thale cress nucleus 36.9 41.67
AT3G07000.1 Thale cress cytosol 35.99 41.64
AT3G27480.1 Thale cress cytosol, nucleus, peroxisome 37.65 41.39
AT5G54050.1 Thale cress nucleus 35.84 41.03
AT2G04500.1 Thale cress cytosol 30.42 40.81
AT3G27473.1 Thale cress cytosol 40.51 40.63
AT3G43890.1 Thale cress cytosol 40.21 40.39
AT4G13992.1 Thale cress mitochondrion 39.01 40.34
AT1G69150.1 Thale cress cytosol 31.33 40.23
AT5G54040.1 Thale cress cytosol 35.84 39.93
AT3G28650.1 Thale cress cytosol 39.61 39.55
AT5G29624.1 Thale cress cytosol 28.92 39.34
AT3G27490.1 Thale cress cytosol 40.36 39.3
AT3G45530.1 Thale cress cytosol 40.66 39.02
AT5G42840.1 Thale cress cytosol 38.7 38.3
AT4G11390.2 Thale cress cytosol 31.17 37.91
AT3G27500.1 Thale cress cytosol 39.31 37.72
AT4G02180.1 Thale cress cytosol 42.77 28.72
KRG95394 Soybean nucleus 24.25 28.4
KRH67075 Soybean nucleus 23.34 27.19
Protein Annotations
MapMan:35.2EntrezGene:832296UniProt:A0A178URW6ProteinID:AED93016.1ArrayExpress:AT5G22355EnsemblPlantsGene:AT5G22355
RefSeq:AT5G22355TAIR:AT5G22355RefSeq:AT5G22355-TAIR-GEnsemblPlants:AT5G22355.1TAIR:AT5G22355.1Unigene:At.45624
ProteinID:BAB08334.1InterPro:DC1GO:GO:0003674GO:GO:0005488GO:GO:0046872RefSeq:NP_680208.1
ProteinID:OAO96393.1PFAM:PF03107UniProt:Q9FMR6SMART:SM00249SUPFAM:SSF57889UniParc:UPI00000A8412
InterPro:Znf_PHD:::::
Description
Cysteine/Histidine-rich C1 domain family protein [Source:UniProtKB/TrEMBL;Acc:Q9FMR6]
Coordinates
chr5:+:7401707..7403972
Molecular Weight (calculated)
76178.8 Da
IEP (calculated)
7.524
GRAVY (calculated)
-0.428
Length
664 amino acids
Sequence
(BLAST)
001: MDLPPKILPT HKYPLTISTR FVNDSCKGCN IKGPIYGGYR CNEPSSTSLF FHKECAEAPP EIINHPSHPQ HTLKLHNSLR NPCKCNLCGK TFFAFGYRCS
101: SKCDFIVDLT CGINPLPVSI EHPKSHHHPV IFLKEPAKPG RRRCGICKGY NGGCSYACLE CEVHFHVECV NLSQEVNHPS HPQHSLKLLE YESLTSDAEE
201: TCLLCGERPD KVLYRCSICN FSVCRFCTKD PPPLAIEHHK THEHRLVLLS RLISFECNAC GMQGDRSPYM CVQCGFVVHR TCIDLPRVIN INRHDHRISF
301: THHLGVGYSR CGICRKDISQ YHGAYLCPRC PNYAAHSLCA TRKDVWDGVE LEGTPDDDDE DIVPFKVVGD NLIKHFSHEE HNLRLNKDNI NRDEGSRCEA
401: CVLPIYSDPI YNCEECRFIL HEKCANHPKK KRHVFHTKPF TLWSRPPRTF HSKDFRFYDV FRCYACRTKS TGFRYVSDWW VLDVRCGSRS EPVIHDGHRH
501: PLYYEHKKDH CCDACYKEID GYLLSCDTCD FDLDLHCTDL PKTVKHSCDN HPLSLCYGEN ATGKYWCDIC EAETDPSKWF YTCSKCVVTA HIECVLGDFS
601: RLMPGRIINY NNVRVEVVLN SYSSRPFCAK CHSRCRAPII LKLCDPYTGY ICSDACVVPD YQYS
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.