Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G54030.1 | Thale cress | cytosol | 58.61 | 68.26 |
| AT5G54050.1 | Thale cress | nucleus | 70.29 | 59.14 |
| AT5G54040.1 | Thale cress | cytosol | 68.24 | 55.87 |
| Bra040595.1-P | Field mustard | cytosol | 47.95 | 54.55 |
| AT4G14980.1 | Thale cress | cytosol | 60.45 | 54.13 |
| AT5G54020.2 | Thale cress | nucleus | 63.52 | 52.72 |
| CDY51540 | Canola | nucleus | 54.1 | 51.46 |
| CDY28703 | Canola | cytosol | 52.25 | 51.2 |
| AT5G44770.1 | Thale cress | cytosol, nucleus, peroxisome | 55.74 | 50.28 |
| AT2G04500.1 | Thale cress | cytosol | 49.59 | 48.89 |
| AT1G58037.1 | Thale cress | cytosol | 30.94 | 44.02 |
| AT5G45730.1 | Thale cress | nucleus | 43.24 | 37.68 |
| AT3G06990.1 | Thale cress | nucleus | 41.19 | 37.29 |
| AT3G07000.1 | Thale cress | cytosol | 41.39 | 35.19 |
| AT4G01925.1 | Thale cress | cytosol | 19.88 | 34.64 |
| AT2G43220.1 | Thale cress | peroxisome | 36.68 | 33.27 |
| AT4G11540.1 | Thale cress | cytosol | 35.04 | 32.57 |
| AT3G27510.1 | Thale cress | cytosol | 27.87 | 30.91 |
| AT3G48400.1 | Thale cress | cytosol | 37.7 | 29.73 |
| AT4G01930.1 | Thale cress | cytosol | 39.55 | 29.6 |
| AT4G16015.1 | Thale cress | cytosol | 31.76 | 28.97 |
| AT5G40320.1 | Thale cress | nucleus | 35.25 | 28.96 |
| AT5G22355.1 | Thale cress | cytosol | 39.34 | 28.92 |
| AT4G01920.1 | Thale cress | cytosol | 38.73 | 28.72 |
| AT3G27480.1 | Thale cress | cytosol, nucleus, peroxisome | 35.45 | 28.64 |
| AT1G69150.1 | Thale cress | cytosol | 30.12 | 28.43 |
| AT4G01910.1 | Thale cress | cytosol | 37.91 | 28.42 |
| AT4G11550.1 | Thale cress | cytosol | 38.52 | 28.14 |
| AT4G11390.2 | Thale cress | cytosol | 31.35 | 28.02 |
| AT4G02190.1 | Thale cress | cytosol | 37.5 | 27.77 |
| AT4G01740.1 | Thale cress | cytosol | 37.09 | 27.76 |
| AT5G59930.1 | Thale cress | cytosol, nucleus, plasma membrane | 36.48 | 27.13 |
| AT3G46800.1 | Thale cress | cytosol | 37.91 | 27.13 |
| AT4G01350.1 | Thale cress | cytosol | 35.45 | 26.53 |
| AT2G19660.2 | Thale cress | nucleus | 37.5 | 26.52 |
| AT1G65180.1 | Thale cress | nucleus | 35.45 | 26.49 |
| AT3G28650.1 | Thale cress | cytosol | 35.86 | 26.32 |
| AT4G01760.1 | Thale cress | cytosol | 35.86 | 26.24 |
| AT3G27473.1 | Thale cress | cytosol | 35.45 | 26.13 |
| AT3G46810.1 | Thale cress | cytosol | 36.68 | 26.09 |
| AT5G59940.1 | Thale cress | cytosol | 34.43 | 25.81 |
| AT2G04680.1 | Thale cress | cytosol | 34.63 | 25.72 |
| AT5G59920.1 | Thale cress | cytosol | 37.3 | 25.63 |
| AT3G27500.1 | Thale cress | cytosol | 36.07 | 25.43 |
| AT4G13992.1 | Thale cress | mitochondrion | 33.4 | 25.39 |
| AT3G27490.1 | Thale cress | cytosol | 35.25 | 25.22 |
| AT5G42840.1 | Thale cress | cytosol | 34.63 | 25.19 |
| AT2G19650.1 | Thale cress | cytosol | 35.04 | 25.07 |
| AT3G43890.1 | Thale cress | cytosol | 33.61 | 24.81 |
| AT5G37620.1 | Thale cress | cytosol | 32.99 | 24.69 |
| AT3G45530.1 | Thale cress | cytosol | 34.22 | 24.13 |
| AT3G45840.1 | Thale cress | mitochondrion, nucleus, peroxisome, vacuole | 28.48 | 23.52 |
| KRG95394 | Soybean | nucleus | 22.95 | 19.75 |
| KRH67075 | Soybean | nucleus | 22.95 | 19.65 |
| AT4G02180.1 | Thale cress | cytosol | 37.91 | 18.71 |
Protein Annotations
| Gene3D:3.30.60.20 | MapMan:35.2 | EntrezGene:833061 | ProteinID:AED93868.1 | ArrayExpress:AT5G29624 | EnsemblPlantsGene:AT5G29624 |
| RefSeq:AT5G29624 | TAIR:AT5G29624 | RefSeq:AT5G29624-TAIR-G | EnsemblPlants:AT5G29624.1 | TAIR:AT5G29624.1 | Unigene:At.55097 |
| InterPro:DC1 | UniProt:F4KBH8 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0035556 | InterPro:IPR002219 | RefSeq:NP_850897.2 |
| InterPro:PE/DAG-bd | PFAM:PF03107 | PFscan:PS50081 | PANTHER:PTHR32410 | SUPFAM:SSF57889 | UniParc:UPI000034F284 |
| SEG:seg | : | : | : | : | : |
Description
Cysteine/Histidine-rich C1 domain family protein [Source:UniProtKB/TrEMBL;Acc:F4KBH8]
Coordinates
chr5:+:11285138..11286604
Molecular Weight (calculated)
56659.3 Da
IEP (calculated)
5.790
GRAVY (calculated)
-0.315
Length
488 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSTDDFVAD TTPELMFPFY HHPLSAYDYS SSYILQEKAY CCFMCVYSLF DKEPMLLPDI DYHCTECGLN MHKKCIKRLF LNWPFLCNHV LNIFQNTFTS
101: SDNIDDFSCH FCQSRIKSSF ARFTLCNINV DEKCMVELQP PLKISEPKHH KYSLTILLWL VTFICSPCGV EGDHNPYVCL ECSLMVHRDC IEDLPRVISI
201: NRHDHRISHT FHLGEREGGW ECGVCQTMIN WVYGAYKCSR CPSYVVHSGC ATKKEVWDGL DLEDVPDEEE EIKDPFKVIN ENGDIVHISH EEHVLRLDEN
301: YVTDDANMRC QCCILAINGD PCYRCVECDF ILHDACANLP RKKQHLLHKH KLTLSSTCID GETYCQCKVY DVYTDGFIYK CHHEDCESKY INYDARCSSV
401: LEPFHHDLHQ HPLYFTLQSS RRCQACDREI HDDPLNCTVC DDYSLFMRCA TLPRKVKHRC DDHFLSLCQG VGNAIGDLWC DICETKTN
101: SDNIDDFSCH FCQSRIKSSF ARFTLCNINV DEKCMVELQP PLKISEPKHH KYSLTILLWL VTFICSPCGV EGDHNPYVCL ECSLMVHRDC IEDLPRVISI
201: NRHDHRISHT FHLGEREGGW ECGVCQTMIN WVYGAYKCSR CPSYVVHSGC ATKKEVWDGL DLEDVPDEEE EIKDPFKVIN ENGDIVHISH EEHVLRLDEN
301: YVTDDANMRC QCCILAINGD PCYRCVECDF ILHDACANLP RKKQHLLHKH KLTLSSTCID GETYCQCKVY DVYTDGFIYK CHHEDCESKY INYDARCSSV
401: LEPFHHDLHQ HPLYFTLQSS RRCQACDREI HDDPLNCTVC DDYSLFMRCA TLPRKVKHRC DDHFLSLCQG VGNAIGDLWC DICETKTN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.