Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G27510.1 | Thale cress | cytosol | 47.4 | 74.55 |
| AT3G27480.1 | Thale cress | cytosol, nucleus, peroxisome | 62.86 | 72.02 |
| AT3G27473.1 | Thale cress | cytosol | 67.77 | 70.85 |
| AT5G42840.1 | Thale cress | cytosol | 66.04 | 68.11 |
| AT3G28650.1 | Thale cress | cytosol | 64.02 | 66.62 |
| AT3G27490.1 | Thale cress | cytosol | 64.16 | 65.1 |
| AT3G45530.1 | Thale cress | cytosol | 63.44 | 63.44 |
| AT4G01925.1 | Thale cress | cytosol | 18.93 | 46.79 |
| AT4G11540.1 | Thale cress | cytosol | 32.37 | 42.67 |
| AT2G04500.1 | Thale cress | cytosol | 29.91 | 41.82 |
| AT1G58037.1 | Thale cress | cytosol | 20.52 | 41.4 |
| AT4G01930.1 | Thale cress | cytosol | 38.87 | 41.26 |
| AT4G11550.1 | Thale cress | cytosol | 39.16 | 40.57 |
| AT4G01910.1 | Thale cress | cytosol | 37.86 | 40.25 |
| AT5G40320.1 | Thale cress | nucleus | 34.39 | 40.07 |
| AT4G01740.1 | Thale cress | cytosol | 37.72 | 40.03 |
| AT4G01920.1 | Thale cress | cytosol | 38.01 | 39.97 |
| AT2G43220.1 | Thale cress | peroxisome | 31.07 | 39.96 |
| AT1G65180.1 | Thale cress | nucleus | 37.43 | 39.66 |
| AT4G14980.1 | Thale cress | cytosol | 31.21 | 39.63 |
| AT4G01760.1 | Thale cress | cytosol | 38.15 | 39.58 |
| AT5G22355.1 | Thale cress | cytosol | 37.72 | 39.31 |
| AT4G02190.1 | Thale cress | cytosol | 37.28 | 39.15 |
| AT5G45730.1 | Thale cress | nucleus | 31.65 | 39.11 |
| AT5G54030.1 | Thale cress | cytosol | 23.55 | 38.9 |
| AT4G16015.1 | Thale cress | cytosol | 30.06 | 38.88 |
| AT3G46800.1 | Thale cress | cytosol | 38.15 | 38.71 |
| AT5G44770.1 | Thale cress | cytosol, nucleus, peroxisome | 30.2 | 38.63 |
| AT3G07000.1 | Thale cress | cytosol | 31.94 | 38.5 |
| AT3G06990.1 | Thale cress | nucleus | 29.91 | 38.4 |
| AT3G46810.1 | Thale cress | cytosol | 38.01 | 38.34 |
| AT3G43890.1 | Thale cress | cytosol | 36.56 | 38.28 |
| AT5G37620.1 | Thale cress | cytosol | 35.84 | 38.04 |
| AT2G04680.1 | Thale cress | cytosol | 35.98 | 37.9 |
| AT3G48400.1 | Thale cress | cytosol | 33.38 | 37.32 |
| AT1G69150.1 | Thale cress | cytosol | 27.75 | 37.14 |
| AT4G01350.1 | Thale cress | cytosol | 34.97 | 37.12 |
| AT2G19660.2 | Thale cress | nucleus | 36.99 | 37.1 |
| AT5G54050.1 | Thale cress | nucleus | 31.07 | 37.07 |
| AT2G19650.1 | Thale cress | cytosol | 36.42 | 36.95 |
| AT5G59930.1 | Thale cress | cytosol, nucleus, plasma membrane | 34.54 | 36.43 |
| AT5G59940.1 | Thale cress | cytosol | 34.25 | 36.41 |
| AT5G54040.1 | Thale cress | cytosol | 31.21 | 36.24 |
| AT5G29624.1 | Thale cress | cytosol | 25.43 | 36.07 |
| AT5G59920.1 | Thale cress | cytosol | 36.99 | 36.06 |
| AT5G54020.2 | Thale cress | nucleus | 30.49 | 35.88 |
| AT4G11390.2 | Thale cress | cytosol | 28.03 | 35.53 |
| AT3G45840.1 | Thale cress | mitochondrion, nucleus, peroxisome, vacuole | 30.06 | 35.19 |
| AT4G13992.1 | Thale cress | mitochondrion | 32.51 | 35.05 |
| AT4G02180.1 | Thale cress | cytosol | 39.16 | 27.4 |
| KRG95394 | Soybean | nucleus | 21.24 | 25.93 |
| KRH67075 | Soybean | nucleus | 20.52 | 24.91 |
Protein Annotations
| Gene3D:3.30.60.20 | MapMan:35.2 | EntrezGene:822372 | ProteinID:AEE77330.1 | ArrayExpress:AT3G27500 | EnsemblPlantsGene:AT3G27500 |
| RefSeq:AT3G27500 | TAIR:AT3G27500 | RefSeq:AT3G27500-TAIR-G | EnsemblPlants:AT3G27500.1 | TAIR:AT3G27500.1 | Unigene:At.51368 |
| ProteinID:BAB01280.1 | InterPro:DC1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0035556 |
| GO:GO:0046872 | InterPro:IPR002219 | RefSeq:NP_189387.2 | InterPro:PE/DAG-bd | PFAM:PF03107 | PFscan:PS50081 |
| UniProt:Q9LT62 | SMART:SM00109 | SMART:SM00249 | SUPFAM:SSF57889 | UniParc:UPI00000A8551 | InterPro:Znf_PHD |
| SEG:seg | : | : | : | : | : |
Description
Cysteine/Histidine-rich C1 domain family protein [Source:UniProtKB/TrEMBL;Acc:Q9LT62]
Coordinates
chr3:-:10182735..10185198
Molecular Weight (calculated)
79582.7 Da
IEP (calculated)
6.738
GRAVY (calculated)
-0.381
Length
692 amino acids
Sequence
(BLAST)
(BLAST)
001: MTYELEELEG HEHLVSRVKH HDGLECDACD RLNVDGYSCS ECKFNIHVAC TFVFDKQEIV DHPSHDGHSL KLLTTGAPDH TDPKCHLCGN NTKRLLFHCS
101: VCQLNLDIFC IADHLLGPEY LNMPWHPHPL LCFDFGSRNW CDFCNENYEG QGYLCYRCGL RIHEKCVVEL QEITQHPSHV RHPLKLLTSG APNYTNPRCH
201: ICGEDTGNLL YHCDICKFNL DLQCAIKSSP PVALSNMKVH EHTLTLMPKL ISFVCDACGT KGDRSPYICV QCDFMTFHQK CARLPRVIHV NHHDHRVSFK
301: YPLGPGDWRC GVCWDEIDWS YGAYSCSLCS RYAIHSLCAT RDDVWDGEEL DGVPEEIEDI EPFKRNDDNT IDHFSHRHNH MSLDKGGEES SFCKACAHPI
401: GSSSSLYKCS ECSFILHETC ANLPMKKRHF LSPQPLTLSY HRLQRRWGVE ICEACQQIFC KGFIYSSYLE ENFDLPCSSI TVPFIHGSHD HHLLYLKLEN
501: GNVKTCQGCG IDEKRVAIGC TKCNYFLDFR CATLPLTVTL SRYDDHPLTL CYGDEKASGK YWCDICERET NPKTWFYTCN DCGVTLHVLC VVGDVRYAKP
601: KAMIEYYIEL LSNNSSSRPF CHNCYCRCPG PFILRIRKQH DAHLGGEYYI FFCSYYCYII TKSKKEYSKI KLRCPPWRSG HQSQLMELQN DQ
101: VCQLNLDIFC IADHLLGPEY LNMPWHPHPL LCFDFGSRNW CDFCNENYEG QGYLCYRCGL RIHEKCVVEL QEITQHPSHV RHPLKLLTSG APNYTNPRCH
201: ICGEDTGNLL YHCDICKFNL DLQCAIKSSP PVALSNMKVH EHTLTLMPKL ISFVCDACGT KGDRSPYICV QCDFMTFHQK CARLPRVIHV NHHDHRVSFK
301: YPLGPGDWRC GVCWDEIDWS YGAYSCSLCS RYAIHSLCAT RDDVWDGEEL DGVPEEIEDI EPFKRNDDNT IDHFSHRHNH MSLDKGGEES SFCKACAHPI
401: GSSSSLYKCS ECSFILHETC ANLPMKKRHF LSPQPLTLSY HRLQRRWGVE ICEACQQIFC KGFIYSSYLE ENFDLPCSSI TVPFIHGSHD HHLLYLKLEN
501: GNVKTCQGCG IDEKRVAIGC TKCNYFLDFR CATLPLTVTL SRYDDHPLTL CYGDEKASGK YWCDICERET NPKTWFYTCN DCGVTLHVLC VVGDVRYAKP
601: KAMIEYYIEL LSNNSSSRPF CHNCYCRCPG PFILRIRKQH DAHLGGEYYI FFCSYYCYII TKSKKEYSKI KLRCPPWRSG HQSQLMELQN DQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.