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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
AT3G27473.1 Thale cress cytosol 69.6 70.54
AT3G27480.1 Thale cress cytosol, nucleus, peroxisome 61.85 68.71
AT3G28650.1 Thale cress cytosol 66.02 66.62
AT3G27500.1 Thale cress cytosol 68.11 66.04
AT3G27510.1 Thale cress cytosol 43.07 65.68
AT3G45530.1 Thale cress cytosol 65.72 63.73
AT3G27490.1 Thale cress cytosol 62.74 61.73
AT4G01925.1 Thale cress cytosol 18.78 45.0
AT1G58037.1 Thale cress cytosol 21.01 41.11
AT4G11540.1 Thale cress cytosol 31.89 40.76
AT4G01930.1 Thale cress cytosol 39.2 40.34
AT5G40320.1 Thale cress nucleus 35.62 40.24
AT2G04500.1 Thale cress cytosol 29.06 39.39
AT4G11550.1 Thale cress cytosol 38.9 39.07
AT5G45730.1 Thale cress nucleus 32.49 38.93
AT5G22355.1 Thale cress cytosol 38.3 38.7
AT2G43220.1 Thale cress peroxisome 31.0 38.66
AT4G01740.1 Thale cress cytosol 37.11 38.19
AT3G07000.1 Thale cress cytosol 32.64 38.15
AT4G02190.1 Thale cress cytosol 37.41 38.09
AT5G44770.1 Thale cress cytosol, nucleus, peroxisome 30.7 38.08
AT3G06990.1 Thale cress nucleus 30.55 38.03
AT1G65180.1 Thale cress nucleus 36.96 37.98
AT4G01910.1 Thale cress cytosol 36.81 37.94
AT4G01920.1 Thale cress cytosol 37.11 37.84
AT4G14980.1 Thale cress cytosol 30.7 37.8
AT3G46810.1 Thale cress cytosol 38.3 37.46
AT4G16015.1 Thale cress cytosol 29.81 37.38
AT4G01350.1 Thale cress cytosol 36.21 37.27
AT4G01760.1 Thale cress cytosol 36.96 37.18
AT5G54030.1 Thale cress cytosol 23.1 36.99
AT3G46800.1 Thale cress cytosol 37.56 36.95
AT2G04680.1 Thale cress cytosol 36.07 36.83
AT5G37620.1 Thale cress cytosol 35.32 36.35
AT3G48400.1 Thale cress cytosol 33.53 36.35
AT5G54050.1 Thale cress nucleus 31.3 36.21
AT3G43890.1 Thale cress cytosol 35.62 36.16
AT1G69150.1 Thale cress cytosol 27.72 35.98
AT5G54040.1 Thale cress cytosol 31.89 35.91
AT5G59930.1 Thale cress cytosol, nucleus, plasma membrane 34.72 35.52
AT2G19650.1 Thale cress cytosol 36.07 35.48
AT5G59940.1 Thale cress cytosol 34.28 35.33
AT2G19660.2 Thale cress nucleus 36.21 35.22
AT5G54020.2 Thale cress nucleus 30.85 35.2
AT5G59920.1 Thale cress cytosol 36.81 34.79
AT5G29624.1 Thale cress cytosol 25.19 34.63
AT4G13992.1 Thale cress mitochondrion 32.64 34.11
AT4G11390.2 Thale cress cytosol 27.72 34.07
AT3G45840.1 Thale cress mitochondrion, nucleus, peroxisome, vacuole 29.21 33.16
AT4G02180.1 Thale cress cytosol 38.45 26.09
KRG95394 Soybean nucleus 21.61 25.57
KRH67075 Soybean nucleus 20.86 24.56
Protein Annotations
MapMan:35.2EntrezGene:834295ProteinID:AED94872.1ArrayExpress:AT5G42840EnsemblPlantsGene:AT5G42840RefSeq:AT5G42840
TAIR:AT5G42840RefSeq:AT5G42840-TAIR-GEnsemblPlants:AT5G42840.1TAIR:AT5G42840.1Unigene:At.55325ProteinID:BAB09185.1
InterPro:DC1GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0007154GO:GO:0007165
GO:GO:0008150GO:GO:0009987GO:GO:0035556RefSeq:NP_199098.1PFAM:PF03107PO:PO:0000084
PO:PO:0020100UniProt:Q9FMN5SMART:SM00249SUPFAM:SSF57889UniParc:UPI000009CFBFInterPro:Znf_PHD
Description
CHP-rich zinc finger protein-like [Source:UniProtKB/TrEMBL;Acc:Q9FMN5]
Coordinates
chr5:+:17179073..17181365
Molecular Weight (calculated)
77151.6 Da
IEP (calculated)
7.158
GRAVY (calculated)
-0.268
Length
671 amino acids
Sequence
(BLAST)
001: MSLYFEGHEH HVSIIKHRDG LECDACDRSF GDVISCGECK FTVHRKCVFM FDIQEIFDHP SHDGHCLKLL TTGAPDDTDQ KCHLCGKKTK RLLYHCSDCK
101: LNVDIDCIID YICARSPLKL PWHDHPLIKV DLGANMPCDF CNESGIDYCC PRCRFMIHER CASVFDSPEI THPSHVRHPL KLRSNGAPDY TNLNCHICGD
201: ATGNLLYHCD ICKFNLNMRC AIREPTPVAL SNMKVHEHTL TLMPRLISFV CDACGMKGDR APYVCVQCDF MIFHQECAKL PRVIHVNHHD HRVSYKYPLG
301: PGEWRCGVCW EEIDWSYGAY SCSLCPNYAM HSLCATRKDV WDGRELDGVL EEIEDIEPFK RNDDNTITHF THEHNLSKDG ITLKKSILCV ACVCPIGTDT
401: FYNCSESSCS FVLHETCANI SKKKRHFLSP VPLVLCLQNQ RNTETCNACQ QVFCKGFIYS SFPKTVYREK FYDLQCSSIT VPFFHGSHDH HLLFLKLGRG
501: NVKTCECCGI VQKEYAIGCT KCNYFLDFRC ATLPLTVRLP RYDDHPLTLC YGDEKASGKC WCDICERETN PKSWFYTCKD CGVTFHIFCV VWDIRFSKQG
601: ETIRDGVELL PNNTSSRPLC KNCQCRCLGP FFVKDYDNIC YCSYYCYARL HSLRYIWSKF RCPPWISEPS T
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.