Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G07000.1 | Thale cress | cytosol | 79.78 | 74.91 |
| AT5G45730.1 | Thale cress | nucleus | 65.49 | 63.04 |
| AT1G58037.1 | Thale cress | cytosol | 39.7 | 62.39 |
| AT2G04500.1 | Thale cress | cytosol | 43.23 | 47.07 |
| AT5G44770.1 | Thale cress | cytosol, nucleus, peroxisome | 46.94 | 46.77 |
| AT4G14980.1 | Thale cress | cytosol | 46.75 | 46.24 |
| AT4G01925.1 | Thale cress | cytosol | 23.01 | 44.29 |
| AT5G54030.1 | Thale cress | cytosol | 33.77 | 43.44 |
| AT5G54050.1 | Thale cress | nucleus | 46.38 | 43.1 |
| AT5G54040.1 | Thale cress | cytosol | 47.31 | 42.79 |
| AT5G54020.2 | Thale cress | nucleus | 46.38 | 42.52 |
| AT5G29624.1 | Thale cress | cytosol | 37.29 | 41.19 |
| AT2G43220.1 | Thale cress | peroxisome | 39.33 | 39.41 |
| AT4G11540.1 | Thale cress | cytosol | 38.03 | 39.05 |
| AT4G16015.1 | Thale cress | cytosol | 37.85 | 38.13 |
| AT3G27510.1 | Thale cress | cytosol | 29.87 | 36.59 |
| AT4G01930.1 | Thale cress | cytosol | 43.41 | 35.89 |
| AT5G40320.1 | Thale cress | nucleus | 38.78 | 35.19 |
| AT4G11550.1 | Thale cress | cytosol | 43.6 | 35.18 |
| AT5G22355.1 | Thale cress | cytosol | 43.23 | 35.09 |
| AT4G01920.1 | Thale cress | cytosol | 42.67 | 34.95 |
| AT4G01910.1 | Thale cress | cytosol | 41.74 | 34.56 |
| AT4G01740.1 | Thale cress | cytosol | 41.37 | 34.2 |
| AT4G11390.2 | Thale cress | cytosol | 34.14 | 33.7 |
| AT4G01760.1 | Thale cress | cytosol | 41.56 | 33.58 |
| AT3G43890.1 | Thale cress | cytosol | 41.0 | 33.43 |
| AT1G65180.1 | Thale cress | nucleus | 40.45 | 33.38 |
| AT4G02190.1 | Thale cress | cytosol | 40.63 | 33.23 |
| AT3G27473.1 | Thale cress | cytosol | 40.63 | 33.08 |
| AT1G69150.1 | Thale cress | cytosol | 31.54 | 32.88 |
| AT3G27490.1 | Thale cress | cytosol | 40.63 | 32.11 |
| AT2G04680.1 | Thale cress | cytosol | 38.78 | 31.81 |
| AT3G46810.1 | Thale cress | cytosol | 40.45 | 31.78 |
| AT4G01350.1 | Thale cress | cytosol | 38.4 | 31.75 |
| AT3G28650.1 | Thale cress | cytosol | 39.15 | 31.73 |
| AT3G46800.1 | Thale cress | cytosol | 40.07 | 31.67 |
| AT3G27480.1 | Thale cress | cytosol, nucleus, peroxisome | 35.44 | 31.62 |
| AT5G59930.1 | Thale cress | cytosol, nucleus, plasma membrane | 38.4 | 31.55 |
| AT3G48400.1 | Thale cress | cytosol | 36.18 | 31.5 |
| AT4G13992.1 | Thale cress | mitochondrion | 37.48 | 31.46 |
| AT5G37620.1 | Thale cress | cytosol | 38.03 | 31.44 |
| AT2G19650.1 | Thale cress | cytosol | 39.15 | 30.94 |
| AT5G59940.1 | Thale cress | cytosol | 37.11 | 30.72 |
| AT2G19660.2 | Thale cress | nucleus | 39.15 | 30.58 |
| AT5G42840.1 | Thale cress | cytosol | 38.03 | 30.55 |
| AT5G59920.1 | Thale cress | cytosol | 39.89 | 30.28 |
| AT3G45530.1 | Thale cress | cytosol | 38.78 | 30.2 |
| AT3G27500.1 | Thale cress | cytosol | 38.4 | 29.91 |
| AT3G45840.1 | Thale cress | mitochondrion, nucleus, peroxisome, vacuole | 32.47 | 29.61 |
| KRG95394 | Soybean | nucleus | 25.42 | 24.16 |
| KRH67075 | Soybean | nucleus | 24.86 | 23.51 |
| AT4G02180.1 | Thale cress | cytosol | 42.86 | 23.36 |
Protein Annotations
| MapMan:35.2 | EntrezGene:819884 | ProteinID:AAF27003.1 | ProteinID:AEE74485.1 | ArrayExpress:AT3G06990 | EnsemblPlantsGene:AT3G06990 |
| RefSeq:AT3G06990 | TAIR:AT3G06990 | RefSeq:AT3G06990-TAIR-G | EnsemblPlants:AT3G06990.1 | TAIR:AT3G06990.1 | Unigene:At.50157 |
| InterPro:DC1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 | RefSeq:NP_187355.1 | PFAM:PF03107 |
| PO:PO:0009005 | ScanProsite:PS01359 | PANTHER:PTHR32410 | UniProt:Q9M900 | SMART:SM00249 | SUPFAM:SSF57889 |
| UniParc:UPI000009D576 | InterPro:Zinc_finger_PHD-type_CS | InterPro:Znf_PHD | SEG:seg | : | : |
Description
Cysteine/Histidine-rich C1 domain family protein [Source:UniProtKB/TrEMBL;Acc:Q9M900]
Coordinates
chr3:+:2206387..2208058
Molecular Weight (calculated)
62111.4 Da
IEP (calculated)
6.347
GRAVY (calculated)
-0.525
Length
539 amino acids
Sequence
(BLAST)
(BLAST)
001: MDQPKQKVKI PCNHPLEYIQ LKGGGWPGSY DYDINTCAGC DEDYGFCYYC ASCSFRAHSE CIEWPDTIDH PSHSRHPLKK VSPGTIDYTD GKCHFCREEL
101: VDPMYHCSLC NFSVDVNCWR HPPQRTIYQP KSHEHTFTLM PRKITFTCNA CGMLDCIDLP RVININRHDH RISRTYHLGH GDWDLCGLCR KEIDWSFGAF
201: TCKRCPSYAV HSKCAVRKDV WDGEELEDVP EEEEEIEDPY KVINDKEIIH FSHEEHSLRL GGDDNVTGYE KMLCDACITP ISSDPFFKCV QCEFFLHKEC
301: ASLPRRKRSI LHIDKLDLRV KNKAGNHYKC RSCQKLFDGF RYKTTFDKFD VRCGSISEPF HHELHPHPLY HIFSPEEKSH ICGACDRPTQ YVLSCTVCEF
401: HLGMDCGTLP TKVKHTCDGH DLSLHHGAGN TDGPLWCDIC EEETDPSVWF YGCDDCVSTL HIKCVLGDMY HFKPGNKYGK AELVANDGMT RPFCIVCEER
501: CMFPSFLKAT VSDSTLVYAC SMNCAYDSYW KKWYYDESG
101: VDPMYHCSLC NFSVDVNCWR HPPQRTIYQP KSHEHTFTLM PRKITFTCNA CGMLDCIDLP RVININRHDH RISRTYHLGH GDWDLCGLCR KEIDWSFGAF
201: TCKRCPSYAV HSKCAVRKDV WDGEELEDVP EEEEEIEDPY KVINDKEIIH FSHEEHSLRL GGDDNVTGYE KMLCDACITP ISSDPFFKCV QCEFFLHKEC
301: ASLPRRKRSI LHIDKLDLRV KNKAGNHYKC RSCQKLFDGF RYKTTFDKFD VRCGSISEPF HHELHPHPLY HIFSPEEKSH ICGACDRPTQ YVLSCTVCEF
401: HLGMDCGTLP TKVKHTCDGH DLSLHHGAGN TDGPLWCDIC EEETDPSVWF YGCDDCVSTL HIKCVLGDMY HFKPGNKYGK AELVANDGMT RPFCIVCEER
501: CMFPSFLKAT VSDSTLVYAC SMNCAYDSYW KKWYYDESG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.