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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
AT4G11540.1 Thale cress cytosol 62.28 79.24
AT4G01925.1 Thale cress cytosol 30.09 71.79
AT4G01910.1 Thale cress cytosol 65.57 67.28
CDY52787 Canola nucleus 63.47 67.19
AT4G01930.1 Thale cress cytosol 65.27 66.87
AT4G01760.1 Thale cress cytosol 66.62 66.72
CDY69979 Canola nucleus 62.87 65.93
AT4G01920.1 Thale cress cytosol 64.82 65.81
AT4G02190.1 Thale cress cytosol 64.37 65.25
AT4G01740.1 Thale cress cytosol 63.02 64.57
CDY22036 Canola cytosol 57.19 64.09
CDY65338 Canola cytosol 63.92 63.73
CDY52789 Canola cytosol 38.62 63.55
AT4G11390.2 Thale cress cytosol 49.7 60.81
CDY21921 Canola plastid 34.28 60.26
CDY22034 Canola endoplasmic reticulum 55.54 58.98
AT1G65180.1 Thale cress nucleus 49.4 50.54
CDY50383 Canola cytosol 62.72 49.7
AT1G58037.1 Thale cress cytosol 25.0 48.69
CDY22052 Canola nucleus 46.11 48.66
AT3G43890.1 Thale cress cytosol 48.05 48.56
AT1G69150.1 Thale cress cytosol 37.28 48.16
CDY22035 Canola cytosol 61.53 46.39
AT4G02180.1 Thale cress cytosol 65.42 44.19
AT5G44770.1 Thale cress cytosol, nucleus, peroxisome 35.48 43.81
AT5G45730.1 Thale cress nucleus 36.68 43.75
AT3G06990.1 Thale cress nucleus 35.18 43.6
AT4G16015.1 Thale cress cytosol 34.88 43.55
AT3G27510.1 Thale cress cytosol 28.59 43.41
AT5G22355.1 Thale cress cytosol 42.81 43.07
AT3G27480.1 Thale cress cytosol, nucleus, peroxisome 38.92 43.05
AT4G14980.1 Thale cress cytosol 35.03 42.94
AT5G40320.1 Thale cress nucleus 38.02 42.76
AT2G43220.1 Thale cress peroxisome 34.43 42.75
AT2G04500.1 Thale cress cytosol 31.59 42.63
AT2G19660.2 Thale cress nucleus 44.01 42.61
AT3G48400.1 Thale cress cytosol 39.22 42.33
AT4G01350.1 Thale cress cytosol 41.17 42.18
AT3G07000.1 Thale cress cytosol 36.23 42.16
AT3G27473.1 Thale cress cytosol 41.77 42.15
AT3G28650.1 Thale cress cytosol 41.77 41.95
AT3G46800.1 Thale cress cytosol 42.52 41.64
AT5G37620.1 Thale cress cytosol 40.42 41.41
AT2G04680.1 Thale cress cytosol 40.57 41.25
AT5G59930.1 Thale cress cytosol, nucleus, plasma membrane 40.12 40.85
AT3G46810.1 Thale cress cytosol 41.92 40.82
AT5G59940.1 Thale cress cytosol 39.67 40.71
CDY50382 Canola cytosol 60.33 40.62
AT4G13992.1 Thale cress mitochondrion 38.92 40.5
AT5G54030.1 Thale cress cytosol 25.15 40.1
AT5G59920.1 Thale cress cytosol 42.07 39.58
AT3G45530.1 Thale cress cytosol 40.87 39.45
AT3G27500.1 Thale cress cytosol 40.57 39.16
AT5G54040.1 Thale cress cytosol 34.88 39.09
AT2G19650.1 Thale cress cytosol 39.82 39.0
AT3G45840.1 Thale cress mitochondrion, nucleus, peroxisome, vacuole 34.43 38.92
AT5G42840.1 Thale cress cytosol 39.07 38.9
AT3G27490.1 Thale cress cytosol 39.67 38.86
AT5G54050.1 Thale cress nucleus 33.68 38.79
AT5G29624.1 Thale cress cytosol 28.14 38.52
AT5G54020.2 Thale cress nucleus 33.23 37.76
KRG95394 Soybean nucleus 24.1 28.4
KRH67075 Soybean nucleus 23.8 27.89
Bra036288.1-P Field mustard cytosol, nucleus, plasma membrane 64.67 25.82
Protein Annotations
Gene3D:3.30.60.20MapMan:35.2EntrezGene:826759ProteinID:AEE83023.1ArrayExpress:AT4G11550EnsemblPlantsGene:AT4G11550
RefSeq:AT4G11550TAIR:AT4G11550RefSeq:AT4G11550-TAIR-GEnsemblPlants:AT4G11550.1TAIR:AT4G11550.1ProteinID:CAB78198.1
ProteinID:CAB82160.1InterPro:DC1RefSeq:NP_192892.1PFAM:PF03107PO:PO:0000293PO:PO:0007616
PO:PO:0009005PO:PO:0009052PO:PO:0020100UniProt:Q9LDV7SUPFAM:SSF57889UniParc:UPI000009CB10
SEG:seg:::::
Description
Cysteine/Histidine-rich C1 domain family protein [Source:UniProtKB/TrEMBL;Acc:Q9LDV7]
Coordinates
chr4:-:6996747..6999693
Molecular Weight (calculated)
76921.0 Da
IEP (calculated)
6.906
GRAVY (calculated)
-0.327
Length
668 amino acids
Sequence
(BLAST)
001: MEYEEYEEVS LPLIHEHLMM PCNYLTRADC CGRFGFTSGG YYCESCSFLV HRKCVEDSSE YIEHPSHSVH PLKLQSKPDH ICDICDKRIV DLCYHCEICD
101: FNVDLYCAKY PPPKVIDISE THHHKLTLLK KGIKFDCGAS KCGEVMYGFP YKCHECDLAF HVDCVWNPPE AKNPSEVNHS HHPLHPLKLH IGQPPDYSDG
201: KCRLCAQKIC DRLFYHCSAC NFSLDMCCLL NPPSQYVMDL KVHAHELTFR PRLDSFTCNA CGLSGDRNPY ICVQCDFMIH QECLDLPRLI NINRHDHRVS
301: RTSVLGVVNS VCGVCRRKVD WTWGGYSCQR CPHYVVHSKC ATREDVWNGK ELEGVPEEIE DVEPYVVIDE NTIQHFSHKE HYLRFHVSAL LWEENKRCNA
401: CTQPIGLQSF YGCVVCDFIL HQNCAESPRK KWHFLHNERL TLVTSKDDYF HCTACDRLSN GFMYQCGDMK LDVLCGSISE PFVHPSHPHH PLYYIPPEEE
501: KQCNGCDNWS SLVLTCIESG CRYFLCFDCA RLPQVVKHRV DAHPLSLCYG EKASGKYWCD ICEKETNPST WFYTCKDHRA SLHTKCVMGD FARLMPGSTL
601: TYSHISYEVV RNNSMSRPFC RACESHCMYP IILKVLGSSA LYICSLNCVD GFWYPKIVSG IKKRQPAK
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.