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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX81261
CDX86029
CDX99153
CDY03408
CDY08844
CDY11652
CDY14517
CDY18692
CDY21814
CDY31298
CDY34322
CDY46357
CDY46828
CDY48156
CDY53953
CDY56082
CDY66333
CDY68857

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G01920.1 CDY11652 AT1G69810.1 21798944
AT4G01920.1 CDY56082 AT1G69810.1 21798944
AT4G01920.1 CDY68857 AT1G69810.1 21798944
AT4G01920.1 CDY46357 AT3G28715.1 21798944
AT4G01920.1 CDX86029 AT3G45640.1 21798944
AT4G01920.1 CDX99153 AT3G45640.1 21798944
AT4G01920.1 CDY21814 AT3G48210.1 21798944
AT4G01920.1 CDY48156 AT3G48210.1 21798944
AT4G01920.1 CDY53953 AT3G48210.1 21798944
AT4G01920.1 CDY66333 AT4G15700.1 21798944
AT4G01920.1 CDY03408 AT4G24900.1 21798944
AT4G01920.1 CDY34322 AT4G24900.1 21798944
AT4G01920.1 CDX81261 AT5G64850.1 21798944
AT4G01920.1 CDY08844 AT5G64850.1 21798944
AT4G01920.1 CDY14517 AT5G64850.1 21798944
AT4G01920.1 CDY18692 AT5G64850.1 21798944
AT4G01920.1 CDY31298 AT5G64850.1 21798944
AT4G01920.1 CDY46828 AT5G64850.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY69979 Canola nucleus 76.72 80.69
CDY52787 Canola nucleus 74.63 79.24
CDY22036 Canola cytosol 69.85 78.52
CDY52789 Canola cytosol 47.01 77.59
CDX97701 Canola cytosol 24.03 75.94
AT4G01925.1 Thale cress cytosol 30.15 72.14
CDY21921 Canola plastid 40.0 70.53
AT4G11540.1 Thale cress cytosol 54.63 69.71
CDY22035 Canola cytosol 90.15 68.17
CDY22034 Canola endoplasmic reticulum 63.88 68.04
AT4G01930.1 Thale cress cytosol 65.67 67.48
AT4G01920.1 Thale cress cytosol 65.67 66.87
AT4G01910.1 Thale cress cytosol 64.63 66.51
AT4G01760.1 Thale cress cytosol 65.22 65.52
AT4G02190.1 Thale cress cytosol 64.18 65.25
AT4G11550.1 Thale cress cytosol 63.73 63.92
AT4G01740.1 Thale cress cytosol 61.19 62.88
CDY50383 Canola cytosol 73.58 58.48
CDY22052 Canola nucleus 53.88 57.03
AT4G11390.2 Thale cress cytosol 43.43 53.3
CDY50382 Canola cytosol 72.09 48.69
CDY06776 Canola cytosol 19.4 45.61
CDY52927 Canola cytosol 25.07 44.56
CDY30196 Canola cytosol 27.01 44.25
AT4G02180.1 Thale cress cytosol 65.07 44.08
CDY48718 Canola cytosol 24.33 43.94
CDY41709 Canola peroxisome 34.33 43.73
CDY29992 Canola cytosol 17.01 43.51
CDY51540 Canola nucleus 32.84 42.88
CDY63460 Canola cytosol, mitochondrion 26.57 42.79
CDY63456 Canola cytosol 25.07 42.53
CDY58516 Canola nucleus 31.79 42.43
CDY46706 Canola mitochondrion 33.73 42.4
CDY28703 Canola cytosol 31.49 42.37
CDX93183 Canola cytosol 41.64 41.89
CDX74184 Canola plasma membrane 25.07 40.98
CDY27940 Canola cytosol 34.48 40.96
CDY36839 Canola cytosol 36.72 40.66
CDY60784 Canola cytosol 20.0 39.88
CDY30007 Canola cytosol, nucleus, plastid 39.25 39.55
CDY64703 Canola cytosol 38.66 39.01
CDY44167 Canola cytosol 28.36 38.62
CDX67463 Canola cytosol 26.72 38.58
CDY09238 Canola cytosol 27.16 38.32
CDY09240 Canola cytosol 27.01 38.11
CDY63290 Canola cytosol 28.51 38.05
CDX74183 Canola cytosol 19.4 37.79
CDY44574 Canola cytosol 26.87 37.34
CDY21132 Canola cytosol 33.88 37.09
CDX88733 Canola cytosol 34.48 37.02
CDY29993 Canola cytosol 34.03 36.95
CDX71062 Canola cytosol 34.48 36.9
CDY27938 Canola cytosol 24.03 36.67
CDY22883 Canola cytosol 35.52 36.45
CDY43524 Canola cytosol 26.12 34.59
CDY40661 Canola cytosol 38.36 33.73
CDY42579 Canola nucleus 13.28 32.48
CDY36353 Canola plastid 14.33 30.77
CDX82703 Canola cytosol 40.75 28.29
KRG95394 Soybean nucleus 22.99 27.16
KRH67075 Soybean nucleus 22.24 26.14
Protein Annotations
MapMan:35.2GO:A0A078JCJ2UniProt:A0A078JCJ2EnsemblPlants:CDY65338ProteinID:CDY65338ProteinID:CDY65338.1
InterPro:DC1GO:GO:0003674GO:GO:0003824GO:GO:0005488GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0007154GO:GO:0007165GO:GO:0008150GO:GO:0009987GO:GO:0035556
GO:GO:0046872GO:GO:0047134EnsemblPlantsGene:GSBRNA2T00045645001InterPro:IPR002219InterPro:PE/DAG-bdPFAM:PF03107
PFscan:PS50081SMART:SM00109SMART:SM00249SUPFAM:SSF57889UniParc:UPI0004EF0219InterPro:Znf_PHD
SEG:seg:::::
Description
BnaCnng46700DBnaCnng46700D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JCJ2]
Coordinates
chrLK034745:+:21405..24632
Molecular Weight (calculated)
76203.8 Da
IEP (calculated)
6.368
GRAVY (calculated)
-0.353
Length
670 amino acids
Sequence
(BLAST)
001: MESEGVSLPL IHEHPMMPWN DLRKGDCCDC CQRFVSQSDG YYCKTCDFFL HKGCGDELSE FIIDHPSHPN HTLQLRHDKG GNICDSCGRE TVNLCYRCEM
101: CDFDVDLHCA KYPPPDVIDN FVTHPHKLTL LKERTEFECS AKCGKGGGDG FPYKCDECDV AFHVDCVWHP EASELNYSPE VNHSYHSLHP LKLLRGPPPE
201: YSDGKCRLCG TEIGEYFYHC SSCNFTVDLP CVFNPPPKSF ADPKVHDHQL TLLPRLDSFT CNACGLKGDR SPYACFDCGF MIHQDCLGLP RVININRHDH
301: RVSRTSVLGD AAMSSVCGVC RKKVDWTYGG FSCKRCPGYV AHSKCATRKD VWNGKELEGI PEEEEEDIEP YVVIDENTIQ HFSHKEHYLR RIHGNGVLYE
401: ETKRCSACIH LIGLQSFYGC VDCDFYLHQK CAECPKRKRH VLHNDRLTLV TNEELEVFNC LVCDRASSGF MYKHGNRKLD VLCGSVSEPF LHPSHAHHPL
501: YYIPTEEVEI CNGCNTREHH ILRCIEGDCG FVLGFKCATL PQVVKHIAYD HPLSLCYGEE EEASGKYWCE ICEKETNPKE WFYTCKNQQA SLHTMCVLGD
601: GTGLMPRSVV KLWGKPTEVV LNNSVTRPFC IWCNSRCMYP IKLKLLGTSG TYACSLECAF YFIIILIELD
Best Arabidopsis Sequence Match ( AT4G01920.1 )
(BLAST)
001: MDSKGVLMPL IHEHLMMPWK NLKRGPCCGC CGRFEAISDG YYCKTCDFFV RKNCADEPSE YIKHPSHPKH TLQLLRPERP TNFCNLCGRM CPIFYRCDLC
101: DFDMDLYCSK YPPPEVIDIS KTHHHRLTLL KKWIKQCICA KCCKIIGNEF PYNCHECDLS FHVDCVWYPP ELELRLEVNH SYHSLHPLKL YAKGQLPDYS
201: DGKCRLCARK IDETFFFHCS PCNFTLDKVC VLRPPQQSLL NLKAHDHQLT LLPKLDSFTC NACGLKGDRS PYVCFQCGFM IHQDCLGLPR LININRHDHR
301: VSRTSVLGVV NSVCGVCRKK VDWSYGGFSC QRCHGYVVHS KCATRKDVWN GKELEGLPEE TEDIEPYVVI DENTIQHFSH KEHYLRLNVN GVLCDDNKRC
401: KACTHPICLQ SFYGCMDCNF ILHQNCAGFL RMKWHVLHNE RLTLVTNKDE GFRCYACDRL SNGFKYQHGN KAFDVRCISI SEPHIHPSHP NHPLYYFPSD
501: EVQWCTGCNM EQDFVLSCIE DNCGFLLCFG CATLPQMVKH RVHDHPLSLC YGEKASGKYW CDICEKETNP HTWFYTCKDH QASLHTKCVL GDLSSLMRRS
601: TIKIEGTSYE VVLNNSISRP FCSWCKMHCI FPIILKTLGA TNEYSCSLEC AECRYTDR
Arabidopsis Description
AT4g01920/T7B11_18 [Source:UniProtKB/TrEMBL;Acc:Q9SYI9]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.