CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44574	Canola	cytosol	74.05	92.95
AT5G40320.1	Thale cress	nucleus	77.02	78.45
CDY58516	Canola	nucleus	43.31	52.19
CDX97701	Canola	cytosol	16.03	45.75
CDY41709	Canola	peroxisome	39.17	45.06
CDY46706	Canola	mitochondrion	39.01	44.28
CDY63456	Canola	cytosol	28.59	43.8
CDY30196	Canola	cytosol	29.59	43.77
CDY27940	Canola	cytosol	40.17	43.09
CDY28703	Canola	cytosol	34.88	42.37
CDY51540	Canola	nucleus	35.7	42.11
CDY27938	Canola	cytosol	29.59	40.77
CDY52927	Canola	cytosol	25.29	40.58
CDY22036	Canola	cytosol	39.67	40.27
CDY21921	Canola	plastid	24.46	38.95
CDY52787	Canola	nucleus	40.5	38.83
CDY60784	Canola	cytosol	21.49	38.69
CDY69979	Canola	nucleus	40.5	38.46
CDY36353	Canola	plastid	19.67	38.14
CDY63290	Canola	cytosol	31.41	37.85
CDY06776	Canola	cytosol	17.52	37.19
CDY42579	Canola	nucleus	16.69	36.86
CDY65338	Canola	cytosol	40.66	36.72
CDX93183	Canola	cytosol	40.0	36.34
CDX67463	Canola	cytosol	27.6	35.99
CDY29992	Canola	cytosol	15.37	35.5
CDY52789	Canola	cytosol	23.64	35.22
CDY48718	Canola	cytosol	21.32	34.77
CDY22034	Canola	endoplasmic reticulum	35.87	34.5
CDY09238	Canola	cytosol	26.78	34.11
CDY43524	Canola	cytosol	28.43	33.99
CDY09240	Canola	cytosol	26.61	33.89
CDY21132	Canola	cytosol	34.21	33.82
CDY29993	Canola	cytosol	34.38	33.71
CDY64703	Canola	cytosol	36.69	33.43
CDY63460	Canola	cytosol, mitochondrion	22.81	33.17
CDY22883	Canola	cytosol	35.37	32.77
CDY30007	Canola	cytosol, nucleus, plastid	34.88	31.73
CDX88733	Canola	cytosol	32.56	31.57
CDX71062	Canola	cytosol	32.07	30.99
CDY44167	Canola	cytosol	25.12	30.89
CDX74183	Canola	cytosol	17.36	30.52
CDX74184	Canola	plasma membrane	20.17	29.76
CDY40661	Canola	cytosol	37.36	29.66
CDY50383	Canola	cytosol	40.0	28.71
CDY22035	Canola	cytosol	41.16	28.1
KRG95394	Soybean	nucleus	25.79	27.51
KRH67075	Soybean	nucleus	25.45	27.02
CDY22052	Canola	nucleus	27.93	26.7
CDY50382	Canola	cytosol	39.5	24.09
CDX82703	Canola	cytosol	38.35	24.04

Protein Annotations

MapMan:35.2	GO:A0A078HHG0	UniProt:A0A078HHG0	EnsemblPlants:CDY36839	ProteinID:CDY36839	ProteinID:CDY36839.1
ncoils:Coil	InterPro:DC1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987
GO:GO:0035556	GO:GO:0046872	GO:GO:0047134	EnsemblPlantsGene:GSBRNA2T00062687001	InterPro:IPR002219	InterPro:PE/DAG-bd
PFAM:PF03107	PFscan:PS50081	PANTHER:PTHR32410	SMART:SM00109	SUPFAM:SSF57889	UniParc:UPI0004EAC76E
SEG:seg	:	:	:	:	:

Description

BnaC04g32320DBnaC04g32320D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HHG0]

Coordinates

chrLK032384:-:244241..246359

Molecular Weight (calculated)

69179.2 Da

IEP (calculated)

6.306

GRAVY (calculated)

-0.322

Length

605 amino acids

Sequence
(BLAST)

001: MVLVEELSYV PTSHGEDDDV SSYDDDDDSL TPSIVFDQIM GPTVMLASHE HPFYIHGSSN GHCDGCPERR DNGFFGYSCP TCDLTVHKEC AESSPEINHP
101: SHQRHPLTLF KHGLPLAAAD DKCRLCGEKL GKLVYHCSIC DFSIDLYCAR NPLELVVHYP KGHEHILTLM PRLIRFTCNA CGLESDRSPY VCPQCDFMIH
201: EDCIYLPRVI SIIRHRHRIS RTYFLGSGDW TCGVCRRRVD GRYGAYCCSI CPDYAVHSKC ATRSDVWDGR ELEDEPEEND ECEEPFWVVT DGVINHFSHR
301: EHDLRLEDGL ANIHGEHTRC KACVRPVYSN SFYNCMHCDD FVLHETCANL PRKQRHVLHN HQLTLYNDDS IVMDFPSTRG IFLCSACDRL CSGFRYECCN
401: IKLDVRCGSI SEPFFYECHP HPLFQTSIGS KICVVCKQES VYVLSCMDCD FVLDFKCATL PNRVRYKYDK KPLSLCYDGD KDVTGSYWCE ICEGEMDQKI
501: MFYTCESYGS TIDIHCVLGD FRYVKPRLQF EFNGKKWKVA LNGINRPGCY KCGFRCKGPF VAACSICKSL NLWIVALMVD IGSAWDKVRN QSGASWILRN
601: RDGKE

Best Arabidopsis Sequence Match ( AT5G40320.1 )
(BLAST)

001: MVLVEELSDV SSPTNEANQA YSYDDDDDDD GSLTPSMVFD QIMGTSLMLP FHEHPVYNHY SSTGQCDGCP ELRENGLHGY NCNTCGLTVH KECAESSPEI
101: NHPSHQRHPL MLLTHGLPQE AEDDKCRLCG EKVGKLVYHC SICDFSLDLF CARNPLSLVV YFRKGHEHTL TLMPRLIRFT CNACGLESDR SPYICAQCDF
201: MIHEDCIYLP RVISIIRHEH RISRTYFLGS GDWKCGVCRR RMDGRYGAYS CSICPDYAVH SRCATRRDVW DGLELEDEPE DIEECEEPFR VVSDGVINHF
301: SHREHDLRLE DGLTNRHDEN IRCRACVRPV YANTFYSCMQ CDDFILHETC ANLPRKKRHV LHNHQLTLYP DDNIVMDFPM LRGVFLCTAC RRLCSGFRYE
401: CCNIKLDVRC GSISEPFFYE CHPHPLFQTS LDSKVCETCK EESDYVLTCM DCDYVLDFEC ATLPPTVRYK YDRHPLKLCY DGDKDMAGSY WCEICEKEMD
501: QNIIFYTCES SGPTIHIECV LGDFRYVKPR LHFEFNKKKW EVALNGINRP GCYKCGFRCK GPFVAVSVDY DISYVCSLLC LWKGETLVYG SIRD

Arabidopsis Description

CHP-rich zinc finger protein-like [Source:UniProtKB/TrEMBL;Acc:Q9FNE5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.