CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 3
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY30196	Canola	cytosol	57.6	75.06
CDY63456	Canola	cytosol	47.09	63.54
CDY06776	Canola	cytosol	30.96	57.89
CDY43524	Canola	cytosol	46.9	49.41
CDY63460	Canola	cytosol, mitochondrion	37.71	48.32
CDX97701	Canola	cytosol	18.2	45.75
CDY41709	Canola	peroxisome	41.84	42.4
CDY52927	Canola	cytosol	29.27	41.38
CDY58516	Canola	nucleus	36.77	39.04
CDY36839	Canola	cytosol	44.28	39.01
CDY27940	Canola	cytosol	40.34	38.12
CDY51540	Canola	nucleus	36.4	37.82
CDY28703	Canola	cytosol	34.52	36.95
CDY60784	Canola	cytosol	23.26	36.9
CDY21921	Canola	plastid	26.27	36.84
CDY22036	Canola	cytosol	40.53	36.24
CDY52789	Canola	cytosol	26.83	35.22
CDY69979	Canola	nucleus	42.03	35.16
CDY52787	Canola	nucleus	41.09	34.71
CDY44574	Canola	cytosol	31.33	34.65
CDY27938	Canola	cytosol	28.52	34.62
CDY22034	Canola	endoplasmic reticulum	40.15	34.02
CDY29992	Canola	cytosol	16.7	33.97
CDY42579	Canola	nucleus	17.45	33.94
CDY65338	Canola	cytosol	42.4	33.73
CDX67463	Canola	cytosol	29.27	33.62
CDY63290	Canola	cytosol	31.33	33.27
CDY09240	Canola	cytosol	29.64	33.26
CDY09238	Canola	cytosol	29.46	33.05
CDX93183	Canola	cytosol	40.9	32.73
CDY48718	Canola	cytosol	22.7	32.61
CDX71062	Canola	cytosol	36.59	31.15
CDY22883	Canola	cytosol	37.9	30.93
CDX88733	Canola	cytosol	36.21	30.93
CDY36353	Canola	plastid	18.01	30.77
CDY21132	Canola	cytosol	34.52	30.07
CDY29993	Canola	cytosol	34.33	29.66
CDX74184	Canola	plasma membrane	22.7	29.51
CDY30007	Canola	cytosol, nucleus, plastid	36.77	29.47
CDY64703	Canola	cytosol	36.59	29.37
CDY44167	Canola	cytosol	26.64	28.86
CDX74183	Canola	cytosol	18.57	28.78
CDY40661	Canola	cytosol	38.65	27.03
CDY50383	Canola	cytosol	42.59	26.93
CDY22052	Canola	nucleus	31.14	26.22
CDY22035	Canola	cytosol	42.78	25.73
KRG95394	Soybean	nucleus	25.7	24.16
KRH67075	Soybean	nucleus	25.52	23.86
CDY50382	Canola	cytosol	41.84	22.48
CDX82703	Canola	cytosol	40.34	22.28

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	GO:A0A078IA09	UniProt:A0A078IA09	EnsemblPlants:CDY46706	ProteinID:CDY46706
ProteinID:CDY46706.1	InterPro:DC1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987
GO:GO:0035556	GO:GO:0046872	GO:GO:0047134	EnsemblPlantsGene:GSBRNA2T00086015001	InterPro:IPR002219	InterPro:IPR013083
InterPro:PE/DAG-bd	PFAM:PF03107	PANTHER:PTHR32410	SMART:SM00109	SMART:SM00249	SUPFAM:SSF57889
UniParc:UPI0004EEBE65	InterPro:Znf_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

BnaC07g42110DBnaC07g42110D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IA09]

Coordinates

chrLK032682:-:58725..61156

Molecular Weight (calculated)

61647.9 Da

IEP (calculated)

7.670

GRAVY (calculated)

-0.284

Length

533 amino acids

Sequence
(BLAST)

001: MNRIKLPTHK HPLYPTPWVR SCSGCYREND CTKDGYRCYE CKIFFHKECA ESSLEINHPS HPEHPLHLSI PEYYYEKHYF LDGKCRICGD ELGRRFYNCS
101: ICKFSVDVAC VKNPPPLTIL FAKAHDHQIS LIPRIISFNC DACGLAGDRS PYSCQQCDFM IHQSCIDLPE IINVNRHEHR LSRRLQLSPG SWICGFCHKK
201: VDWSCGAYSC SICPDYAIHS RCALRDDVWD KLELKGIPEE PQEIKPYKVV NGNLIRHFSH EEHYLQLNEE NIICGGSIRC EACVLPICSQ AFYSCVQCDF
301: ILHKTCANLP RKKRHMYHAK PLTLVVGDMT HFYCSACSNR SSGFRYTYSI TNFNIDVKCS ALSESIFHES HGCTLYYIYG NGKHCIACGN WSYSTFNCDD
401: CKFVLDLKCV VLPKTTRHWY DEHILSLCYE NPTKGEHWCD ICEETFHTKC VLGDFSLLMP GRVITLITYY GKTRFEVIQT HPGFLPRCYI CSSRRAVPFV
501: SKTEFREQRI NIDAVTWVTA TGAFVYNKLY VDR

Best Arabidopsis Sequence Match ( AT4G01910.1 )
(BLAST)

001: MDSKGVVSLP LIHNHQMMPW NDLRKGDCCG HFEAISDGYY CKRCDFFVHK TCGDGVSEYI EHPSHPNHTL ELCSNLRFHC DLCGRRTNYL SYYCEICGFI
101: VDLHCAMYPP PEFIENSERH HHKLTLLKER IAAFDCDAKC GKISGNEFAY KCQECDLTFH VDCVWHPSEV YHPLEVNHSY HPSHPLKLHT GQRPDYSDGA
201: CRLCARKIDD RYFYHCSSCN FTLDMRCVLH PPQQSLLNLK AHDHQLTLLP RLDSFTCNAC GLKGDRSPYV CFQCGFMIHQ DCLSLPRLIN INRHDHRVSR
301: TSVLGVVNSV CEVCHRKVDW TCGGFSCQRC SGYVVHSKCA TNKDVWNGKE LEGVPEETED IKPFVVIDNN TIQHFSHKKH YLRLHVNGVL CDDKKRCRAC
401: THPICLQSFY GCMDCDFILH QNCAGFPRKR WHVLHNERLT LVSYEYDFFQ CQACNRFSNG FSYQYSGITF DVGCGSISEP FVHPSHPDHP LYYTLLDEET
501: KSSCNGCNKS SYSVLRCIED DCRFAICFKC ATFPQVVKHR VDDHPLSLCF DKEASGKYWC DICEKETNPE TWFYTCKDYR ASLHIKCVLG DFSWLMPGST
601: IDLSELSKVV LNNSISRPFC SGCKMHCIFP IILKIVGTSD KYFCSIECAF G

Arabidopsis Description

Cysteine/Histidine-rich C1 domain family protein [Source:UniProtKB/TrEMBL;Acc:Q9SYI8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.