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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX77762
CDX84285
CDX87569
CDX88314
CDX97786
CDY05836
CDY16531
CDY20854
CDY23978
CDY25971
CDY29635
CDY31636
CDY32644
CDY32837
CDY38848
CDY41046
CDY61552
CDY64679
CDY70727

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G19650.1 CDY16531 AT1G49850.1 21798944
AT2G19650.1 CDY20854 AT1G49850.1 21798944
AT2G19650.1 CDY32837 AT1G49850.1 21798944
AT2G19650.1 CDY61552 AT1G49850.1 21798944
AT2G19650.1 CDX87569 AT1G76760.1 21798944
AT2G19650.1 CDX88314 AT1G76760.1 21798944
AT2G19650.1 CDX97786 AT2G30880.1 21798944
AT2G19650.1 CDY23978 AT2G30880.1 21798944
AT2G19650.1 CDY29635 AT2G30880.1 21798944
AT2G19650.1 CDX84285 AT2G34720.1 21798944
AT2G19650.1 CDY31636 AT2G34720.1 21798944
AT2G19650.1 CDX77762 AT5G47370.1 21798944
AT2G19650.1 CDY25971 AT5G47370.1 21798944
AT2G19650.1 CDY41046 AT5G47370.1 21798944
AT2G19650.1 CDY64679 AT5G47370.1 21798944
AT2G19650.1 CDY05836 AT5G51100.1 21798944
AT2G19650.1 CDY32644 AT5G51100.1 21798944
AT2G19650.1 CDY38848 AT5G51100.1 21798944
AT2G19650.1 CDY70727 AT5G51100.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY52927 Canola cytosol 48.05 84.88
CDY48718 Canola cytosol 34.38 61.73
AT2G19650.1 Thale cress cytosol 57.21 55.87
CDX97701 Canola cytosol 15.62 49.06
CDY41709 Canola peroxisome 36.04 45.63
CDY22036 Canola cytosol 38.74 43.29
CDY30196 Canola cytosol 26.43 43.03
CDY52787 Canola nucleus 40.69 42.95
CDY29992 Canola cytosol 16.82 42.75
CDY52789 Canola cytosol 25.98 42.61
CDY69979 Canola nucleus 40.24 42.07
CDY65338 Canola cytosol 41.89 41.64
CDY06776 Canola cytosol 17.72 41.4
CDY63456 Canola cytosol 24.47 41.27
CDX67463 Canola cytosol 28.68 41.16
CDY63290 Canola cytosol 30.93 41.04
CDY46706 Canola mitochondrion 32.73 40.9
CDY58516 Canola nucleus 30.63 40.64
CDY36839 Canola cytosol 36.34 40.0
CDY64703 Canola cytosol 39.79 39.91
CDY51540 Canola nucleus 30.63 39.77
CDY22034 Canola endoplasmic reticulum 37.54 39.75
CDY28703 Canola cytosol 29.58 39.56
CDY21921 Canola plastid 22.52 39.47
CDX71062 Canola cytosol 37.09 39.46
CDY60784 Canola cytosol 19.82 39.29
CDY30007 Canola cytosol, nucleus, plastid 39.19 39.25
CDY63460 Canola cytosol, mitochondrion 24.47 39.18
CDX88733 Canola cytosol 36.34 38.78
CDX82703 Canola cytosol 55.86 38.55
CDY29993 Canola cytosol 35.59 38.41
CDY09238 Canola cytosol 27.33 38.32
CDX74184 Canola plasma membrane 23.57 38.29
CDY27940 Canola cytosol 32.28 38.12
CDY09240 Canola cytosol 27.18 38.11
CDY21132 Canola cytosol 34.98 38.07
CDY22883 Canola cytosol 37.09 37.83
CDX74183 Canola cytosol 19.22 37.21
CDY44167 Canola cytosol 27.48 37.2
CDY27938 Canola cytosol 24.32 36.9
CDY44574 Canola cytosol 26.13 36.1
CDY43524 Canola cytosol 26.58 34.98
CDY40661 Canola cytosol 39.04 34.12
CDY22052 Canola nucleus 30.63 32.23
CDY50383 Canola cytosol 40.69 32.15
CDY42579 Canola nucleus 12.76 31.02
CDY22035 Canola cytosol 40.99 30.81
CDY36353 Canola plastid 14.41 30.77
CDY50382 Canola cytosol 40.24 27.02
KRG95394 Soybean nucleus 22.97 26.98
KRH67075 Soybean nucleus 21.92 25.61
Protein Annotations
EnsemblPlants:CDX93183EnsemblPlantsGene:GSBRNA2T00155117001GO:A0A078E0U2GO:GO:0003674GO:GO:0003824GO:GO:0007154
GO:GO:0007165GO:GO:0008150GO:GO:0009987GO:GO:0035556GO:GO:0047134InterPro:DC1
InterPro:IPR002219InterPro:PE/DAG-bdPFAM:PF03107ProteinID:CDX93183ProteinID:CDX93183.1SMART:SM00109
SUPFAM:SSF57889UniParc:UPI0004EF4158MapMan:35.2:::
Description
BnaC04g47130D
Coordinates
chrLK031875:+:179867..183767
Molecular Weight (calculated)
76617.3 Da
IEP (calculated)
6.856
GRAVY (calculated)
-0.329
Length
666 amino acids
Sequence
(BLAST)
001: MEEIKIPFHE HLVRPCTRFL KAIWCGACGE NQYRIYGGYR CNELGCDEAF HNECAEALPE IINSFHPEHP LTLIQDDDLH NACSLCQQRF ILGYSCSICD
101: FQIDMKCVRI PPPLVISENS CLHEHPLKLS YGEPSDSLEY DCAVCGFNIG YKHKYYYRCH QCKFAIHLRC VDKAPGAYHT SHPEHPLKSI SSPPDYADKK
201: CLLCGDEFDD SKPWHLEDKK LHHCDVCNFS ICRGCKTNPP PVCVVSSTTH EHQLHLVPRR MDFTCNACGA LGDRSSYFCL QCNFMIHREC IDLPRVININ
301: RHDHRISYTR RLGHGESPWK CGVCRKKVDG FYGAYTCSKC STFVVHARCA TRKDVWDNVE LEGMPEEEVI APFEVVDDST IRHFSHDHNL YINKDGQILH
401: ENIVCEACVF QIGSESFYSC RKCDFILHEK CANLPRKKRH VCHNQPFTLN TVSRSEECFL CDKRFSGFRY ESNVSFQITL DVRCCSISEP FVHESHPHPL
501: YHVSDSTGYM VRRMLSCDKL SCDECDFSLE FKDAVLPKKV MRNRYDDHPL FLSYGESNVN GEYYWCEACE AKLDPKKWFY TCNDCGITLH VPCVVGDFSY
601: IKHGTKRHSF EVCYVSNTSI CRPFCFECGS RCMLPSILKV FMSGGSVYIC SEKCLASQSI NIFLVN
Best Arabidopsis Sequence Match ( AT5G37620.1 )
(BLAST)
001: MEKIELPIHK HPLLPITRFF SRHGCNGCGS DGYIYGGYHC NELGCETPAF HRECAESLQE IKHFSHPDHP LNLRLNDKAS TCNRCGIHLL RKTYIYVCSI
101: CDFKLDLHCA KDAAPLPILE NYNLHEHPLK LFDVSKSLKR VRLRECKTCD SPFLIEKLCY ICYQCKILFH ASCAEFFPEA NHTSHPQHPL KLLKFAEAPD
201: YADKKCLLCD EKFDQDQGLH HCDVCNFSIC RACMKNPPPV GVESPTTHEH QLHLVPRRIH FTCNACGTLG EQSPYFCLQC NFMIHRQCID LPRVININRH
301: DHRISYTRRI RHGKGICKVC RKMVDGFYGG YICVKCLSFA IHARCATRED VWEMVELEGT PEEDEIGPFE VIDDNTIKHF SHDHNLRINN DGDGQILHEN
401: IVCEACALQI LSEPFYSCKQ CNFKLHQKCA NHPRKKHHVY RNLPFTLLTS GNEIFQCWLC LQEFNGFMYQ SGHYVIDVRC AAISDTLEYK SHQHSLYYYS
501: TTYTHCSRCG KKDSVFRCDE CDYGLGGKCA ILPGKVMNNR YDDHPLFLSF DEMNVDGEYW CEACETKVNS KEWFYTCNDC GTTLHISCVV GDFSYIKHGS
601: HLMNTKVVSN TSICRPFCFV CNSRCKLPSI LKLSKGGVNV YICSFKCRLE TY
Arabidopsis Description
CHP-rich zinc finger protein-like [Source:UniProtKB/TrEMBL;Acc:Q9FHQ8]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.