Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 6
- golgi 5
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX74183 | Canola | cytosol | 40.98 | 48.84 |
| CDY64703 | Canola | cytosol | 61.95 | 38.25 |
| CDY30007 | Canola | cytosol, nucleus, plastid | 61.71 | 38.05 |
| CDY29992 | Canola | cytosol | 23.17 | 36.26 |
| CDY09238 | Canola | cytosol | 41.95 | 36.21 |
| CDX67463 | Canola | cytosol | 40.98 | 36.21 |
| CDY52789 | Canola | cytosol | 35.85 | 36.21 |
| CDY09240 | Canola | cytosol | 41.71 | 36.0 |
| CDY48718 | Canola | cytosol | 31.95 | 35.31 |
| CDY06776 | Canola | cytosol | 24.39 | 35.09 |
| CDY52927 | Canola | cytosol | 32.2 | 35.01 |
| CDY63460 | Canola | cytosol, mitochondrion | 35.12 | 34.62 |
| AT5G59940.1 | Thale cress | cytosol | 54.88 | 34.56 |
| AT4G01350.1 | Thale cress | cytosol | 54.63 | 34.36 |
| CDX71062 | Canola | cytosol | 51.71 | 33.87 |
| CDX88733 | Canola | cytosol | 50.73 | 33.33 |
| AT5G59920.1 | Thale cress | cytosol | 57.32 | 33.1 |
| CDX97701 | Canola | cytosol | 17.07 | 33.02 |
| CDY40661 | Canola | cytosol | 60.98 | 32.81 |
| AT5G59930.1 | Thale cress | cytosol, nucleus, plasma membrane | 52.2 | 32.62 |
| CDY42579 | Canola | nucleus | 19.02 | 28.47 |
| CDY63290 | Canola | cytosol | 31.95 | 26.1 |
| CDY22034 | Canola | endoplasmic reticulum | 39.27 | 25.6 |
| CDY22052 | Canola | nucleus | 39.02 | 25.28 |
| CDY65338 | Canola | cytosol | 40.98 | 25.07 |
| CDY52787 | Canola | nucleus | 36.34 | 23.61 |
| CDX93183 | Canola | cytosol | 38.29 | 23.57 |
| CDY43524 | Canola | cytosol | 29.02 | 23.52 |
| CDY41709 | Canola | peroxisome | 30.0 | 23.38 |
| CDY69979 | Canola | nucleus | 35.85 | 23.08 |
| CDY46706 | Canola | mitochondrion | 29.51 | 22.7 |
| CDY22036 | Canola | cytosol | 32.68 | 22.48 |
| CDY63456 | Canola | cytosol | 21.46 | 22.28 |
| CDY21921 | Canola | plastid | 20.24 | 21.84 |
| CDY51540 | Canola | nucleus | 25.61 | 20.47 |
| CDY22883 | Canola | cytosol | 32.2 | 20.21 |
| CDY36839 | Canola | cytosol | 29.76 | 20.17 |
| CDY28703 | Canola | cytosol | 24.39 | 20.08 |
| CDY27940 | Canola | cytosol | 27.07 | 19.68 |
| CDY58516 | Canola | nucleus | 23.9 | 19.52 |
| CDY50383 | Canola | cytosol | 39.02 | 18.98 |
| CDY21132 | Canola | cytosol | 27.8 | 18.63 |
| CDY29993 | Canola | cytosol | 27.56 | 18.31 |
| CDY22035 | Canola | cytosol | 38.29 | 17.72 |
| CDY30196 | Canola | cytosol | 17.07 | 17.11 |
| CDX82703 | Canola | cytosol | 39.27 | 16.68 |
| CDY44167 | Canola | cytosol | 19.51 | 16.26 |
| CDY27938 | Canola | cytosol | 17.32 | 16.17 |
| CDY50382 | Canola | cytosol | 38.78 | 16.03 |
| CDY36353 | Canola | plastid | 11.71 | 15.38 |
| CDY44574 | Canola | cytosol | 17.56 | 14.94 |
| KRG95394 | Soybean | nucleus | 18.54 | 13.4 |
| KRH67075 | Soybean | nucleus | 17.56 | 12.63 |
| CDY60784 | Canola | cytosol | 8.29 | 10.12 |
Protein Annotations
| EnsemblPlants:CDX74184 | EnsemblPlantsGene:GSBRNA2T00111947001 | Gene3D:3.30.40.10 | GO:A0A078CDD1 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 | InterPro:DC1 | InterPro:IPR000315 |
| InterPro:IPR013083 | InterPro:Znf_B-box | InterPro:Znf_RING/FYVE/PHD | PFAM:PF03107 | PFscan:PS50119 | ProteinID:CDX74184 |
| ProteinID:CDX74184.1 | SEG:seg | SUPFAM:SSF57889 | UniParc:UPI0004EEEAB6 | MapMan:35.2 | : |
Description
BnaA03g28630D
Coordinates
chrLK031800:+:1683706..1686119
Molecular Weight (calculated)
47005.6 Da
IEP (calculated)
7.098
GRAVY (calculated)
-0.156
Length
410 amino acids
Sequence
(BLAST)
(BLAST)
001: MDTFVPIHVY SVVWLPVHVH PLFPIAMFTK SVCAWCHLEG IMYGSYVCNE VSCRFRLHKE CAEAPVEINH HPCHPEHALL LTNDSPTEDG TCDFCGQKLL
101: SPYYTCPTCE FKVDFICGIK PSPSAIEHPV CHDHQLVFLK KGREEEVHCE VCKKSISGPS YSCPECNNVY FHLDCVHLSK EVNHPCHSSH PLKIIAYECR
201: LCTTTRPEEM LCHCSICNFT LCLSCTKLPP PLVVDHSKTH THTLRLISSK LAFTCKVCGI DGHRRRPYIC LECDFVIHGH CIGFPHVINI NRHDHHGRGG
301: RCGVCRRNVS QYYGAYSCSV CPNYTVHTRC ATNYTTWNYE ELEGTHEKIQ DIAPFKVVEH NLIRHFSHSE HTLRLLKVHD DDFIQCEACF RLVEFNWPCL
401: QLHGMLFFSP
101: SPYYTCPTCE FKVDFICGIK PSPSAIEHPV CHDHQLVFLK KGREEEVHCE VCKKSISGPS YSCPECNNVY FHLDCVHLSK EVNHPCHSSH PLKIIAYECR
201: LCTTTRPEEM LCHCSICNFT LCLSCTKLPP PLVVDHSKTH THTLRLISSK LAFTCKVCGI DGHRRRPYIC LECDFVIHGH CIGFPHVINI NRHDHHGRGG
301: RCGVCRRNVS QYYGAYSCSV CPNYTVHTRC ATNYTTWNYE ELEGTHEKIQ DIAPFKVVEH NLIRHFSHSE HTLRLLKVHD DDFIQCEACF RLVEFNWPCL
401: QLHGMLFFSP
001: MATTAVNLPI HEHPLYPSAR CIIGECDGCH VNGYMYNGYF CNEPFCFIWF HKECAEAPAE ISHSSHHQHP LLLTNDSIDG PCDLCGQKLL PPCYSCSTCE
101: FKVDLTCAMK PSPPAIEHPL CHHHSLVFLK KREEKVSCEL CKDSIAGPSY SCLECDVYFH VNCIQLSKEV NHPCHSAHPL KLIPFESLTD DAETTCLLCG
201: KKPAENMLYH CSVCNFTSCL GCTKNPPLLV IEHIKTHKHP LILFPRRIPC ICDICGKKCE FAVYVCPQCD FVTARGCIDL ARVININRHD HRIYLTHHLG
301: TGYSKCGVCH ENVNQYKGAY SCSVCPHYAV HSTCAVRTDV WDGVELEGTT EITEDNSPFK VVGDNLICHF SHEEHPLRFQ KDDVFIHDEH KRCAACIHPL
401: GFGSIYCCET CPFILHEKCA NLPMKKRLVF GTRPYTLMKE TTQLTDCTLC GIFSDGFAYS SRWLDVDVHC GSLNEPLVHD CHIHPLNFDK MEGHFCDGCK
501: KNIDDYMLRC KACDFDLCLY CATLPKKIWH RNDGHPLTLC CEEKEEASDK YWCDICEKEL DPSIWFYTCF DCGVTLHAQC VLGDFSRLVL GQNYWFGEKV
601: KFGAVPNNRN TRPLCIQCQS RCKVSVILKE RNEYNRYICS RSCLLSYLGE KI
101: FKVDLTCAMK PSPPAIEHPL CHHHSLVFLK KREEKVSCEL CKDSIAGPSY SCLECDVYFH VNCIQLSKEV NHPCHSAHPL KLIPFESLTD DAETTCLLCG
201: KKPAENMLYH CSVCNFTSCL GCTKNPPLLV IEHIKTHKHP LILFPRRIPC ICDICGKKCE FAVYVCPQCD FVTARGCIDL ARVININRHD HRIYLTHHLG
301: TGYSKCGVCH ENVNQYKGAY SCSVCPHYAV HSTCAVRTDV WDGVELEGTT EITEDNSPFK VVGDNLICHF SHEEHPLRFQ KDDVFIHDEH KRCAACIHPL
401: GFGSIYCCET CPFILHEKCA NLPMKKRLVF GTRPYTLMKE TTQLTDCTLC GIFSDGFAYS SRWLDVDVHC GSLNEPLVHD CHIHPLNFDK MEGHFCDGCK
501: KNIDDYMLRC KACDFDLCLY CATLPKKIWH RNDGHPLTLC CEEKEEASDK YWCDICEKEL DPSIWFYTCF DCGVTLHAQC VLGDFSRLVL GQNYWFGEKV
601: KFGAVPNNRN TRPLCIQCQS RCKVSVILKE RNEYNRYICS RSCLLSYLGE KI
Arabidopsis Description
Cysteine/Histidine-rich C1 domain family protein [Source:UniProtKB/TrEMBL;Acc:F4JI14]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.