CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 2
mitochondrion 3
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06776	Canola	cytosol	61.3	89.47
CDY43524	Canola	cytosol	64.42	52.96
CDY29992	Canola	cytosol	27.16	43.13
CDY52789	Canola	cytosol	39.9	40.89
CDX97701	Canola	cytosol	19.95	39.15
CDY63456	Canola	cytosol	35.82	37.72
CDY46706	Canola	mitochondrion	48.32	37.71
CDY48718	Canola	cytosol	33.17	37.2
CDY52927	Canola	cytosol	31.97	35.28
CDX74184	Canola	plasma membrane	34.62	35.12
CDX67463	Canola	cytosol	36.54	32.76
CDY42579	Canola	nucleus	20.91	31.75
CDX74183	Canola	cytosol	24.52	29.65
CDY09238	Canola	cytosol	32.21	28.21
CDY09240	Canola	cytosol	32.21	28.21
CDY30196	Canola	cytosol	26.92	27.38
CDY22034	Canola	endoplasmic reticulum	41.11	27.19
CDY65338	Canola	cytosol	42.79	26.57
CDY22052	Canola	nucleus	40.14	26.38
CDY52787	Canola	nucleus	39.42	25.99
CDY69979	Canola	nucleus	39.42	25.75
CDX88733	Canola	cytosol	38.22	25.48
CDX71062	Canola	cytosol	37.98	25.24
CDY22036	Canola	cytosol	35.34	24.66
CDX93183	Canola	cytosol	39.18	24.47
CDY64703	Canola	cytosol	37.98	23.8
CDY30007	Canola	cytosol, nucleus, plastid	37.26	23.31
CDY21921	Canola	plastid	21.15	23.16
CDY36839	Canola	cytosol	33.17	22.81
CDY22883	Canola	cytosol	35.58	22.66
CDY41709	Canola	peroxisome	28.61	22.62
CDY51540	Canola	nucleus	27.64	22.42
CDY28703	Canola	cytosol	25.96	21.69
CDY40661	Canola	cytosol	39.18	21.39
CDY27940	Canola	cytosol	28.61	21.1
CDY29993	Canola	cytosol	30.53	20.58
CDY50383	Canola	cytosol	41.59	20.52
CDY58516	Canola	nucleus	24.76	20.52
CDY21132	Canola	cytosol	29.57	20.1
CDY27938	Canola	cytosol	20.91	19.82
CDY22035	Canola	cytosol	41.11	19.3
CDY63290	Canola	cytosol	22.6	18.73
CDY44167	Canola	cytosol	21.39	18.09
CDY50382	Canola	cytosol	40.87	17.14
CDX82703	Canola	cytosol	37.98	16.37
CDY44574	Canola	cytosol	18.03	15.56
CDY36353	Canola	plastid	9.86	13.14
KRH67075	Soybean	nucleus	16.11	11.75
KRG95394	Soybean	nucleus	15.87	11.64
CDY60784	Canola	cytosol	7.69	9.52

Protein Annotations

Gene3D:3.30.60.20	MapMan:35.2	GO:A0A078JEX5	UniProt:A0A078JEX5	EnsemblPlants:CDY63460	ProteinID:CDY63460
ProteinID:CDY63460.1	InterPro:DC1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	GO:GO:0035556
GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00039312001	InterPro:IPR002219	InterPro:PE/DAG-bd	PFAM:PF03107	PFscan:PS50081
SMART:SM00109	SMART:SM00249	SUPFAM:SSF57889	UniParc:UPI0004EF3A62	InterPro:Znf_PHD	SEG:seg

Description

BnaCnng42150DBnaCnng42150D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JEX5]

Coordinates

chrLK034302:+:25296..27175

Molecular Weight (calculated)

47482.6 Da

IEP (calculated)

7.759

GRAVY (calculated)

-0.155

Length

416 amino acids

Sequence
(BLAST)

001: MIRIKLPTHK HPLYPTPWVS RCKGCPRRGG YVKDGYRCYE CAISFHKECA EAILEIHHPS HHAHPLSLVF KRRGPKNCKL CGVYLYNSKY YQCSICDFVV
101: HTACAKNPPP NVIEYPKAHE HSLVIAKDLS DFKCDFCGEE IQGSYRYRCS PCRLEFEIGC SMLALEIDYP YHPKHPLKFL TKEEHHFSDG KCLICGEELG
201: LKFYHCSICK FSVDVSCVRD PPPLTVLFPK AHEHQLSLTP RKISFDCDAC GMAGDRSPYS CQQCYFMIHQ ICIDLPEIIN VNRHEHRLSR RLHLSPESWV
301: CGFCHKNVDW SYGAYSCSIC PNYVIHSKCA IRDDVWDKLE LKGIPEEPQD IEPFKVSSIL TFNTSVLMLS VPCFLNLSSM KVIHAPCTTI TTRIWNALLA
401: INGTVNCLVA MTAALE

Best Arabidopsis Sequence Match ( AT3G48400.1 )
(BLAST)

001: MERSVDLPIH KHPLYHSSRF INGRCRGCKQ TSPIYSGYRC NDSDCNHVWY HKECGESLPE INHPSHLEHP LCLIDYRGSG TCAFCGAFLF GPTYHCWICA
101: FNIDIACARK QLPPLAAIEN PKCHNHSLVL LEKQVKKDHC GVCKKTVFGM YPYVCLECDV YFHVECINIS REVHHSSHTN HTLELFGSES LPDSAQKTCL
201: LCDDVSDHLI YHCSVCNFSI CVYCAINPPP LAIEHLKTHE HTLTLLPRQV KFICNACGMK GDGCPYFCLG CGYLIHRKCI DLPRVININR HDHRISLTHH
301: LGLQYSECGV CRQSVNGYYG GYSCSLCPNY VVHPQCAMKD DVWDGIELEG TPEDSEQDTA PFEVVDDNTI KHFSHEKHNL MLNKNGIITQ HDEITRCQAC
401: VLPLSSDPSY SCGQCDYVLH ETCANLPRKK RHVFNNKPFT LHTGGKDSSR NWFECDACRT ISNGFRYVSG DWILDVHCGS MSEPLLHDGH SHPLYYYRRQ
501: GKSCRSCHNK VVKPRVLCCD TCDFDLDFYC ANLPKTVKHC YDEHPLSLCH GEDDVIKDNK YWCDICETET DPKKWFYTCY DCGGGTLMSM DVSMKLFLTA
601: RVLDHSATNA ILDVKIASF

Arabidopsis Description

Cysteine/Histidine-rich C1 domain family protein [Source:UniProtKB/TrEMBL;Acc:F4JDY6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.