CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra025569.1-P	Field mustard	nucleus	83.33	48.78
CDY42579	Canola	nucleus	33.65	38.32
CDY44574	Canola	cytosol	38.14	24.69
CDY58516	Canola	nucleus	34.94	21.71
CDY36839	Canola	cytosol	38.14	19.67
CDY60784	Canola	cytosol	20.51	19.05
CDY27940	Canola	cytosol	33.65	18.62
CDY27938	Canola	cytosol	25.96	18.45
CDY46706	Canola	mitochondrion	30.77	18.01
CDY28703	Canola	cytosol	27.56	17.27
CDY41709	Canola	peroxisome	28.85	17.11
CDY63290	Canola	cytosol	27.24	16.93
CDY09238	Canola	cytosol	25.64	16.84
CDY09240	Canola	cytosol	25.64	16.84
CDY30196	Canola	cytosol	21.79	16.63
CDY51540	Canola	nucleus	27.24	16.57
CDY52787	Canola	nucleus	32.69	16.16
CDY44167	Canola	cytosol	25.32	16.06
CDY63456	Canola	cytosol	20.19	15.95
CDY69979	Canola	nucleus	31.73	15.54
CDY21921	Canola	plastid	18.91	15.53
CDX71062	Canola	cytosol	31.09	15.5
CDY30007	Canola	cytosol, nucleus, plastid	33.01	15.49
CDX88733	Canola	cytosol	30.45	15.22
CDY22036	Canola	cytosol	28.53	14.93
CDY22034	Canola	endoplasmic reticulum	29.81	14.79
CDY64703	Canola	cytosol	31.41	14.76
CDY52927	Canola	cytosol	17.63	14.59
CDX93183	Canola	cytosol	30.77	14.41
CDY65338	Canola	cytosol	30.77	14.33
CDY21132	Canola	cytosol	27.56	14.05
KRH67075	Soybean	nucleus	25.32	13.86
CDY29993	Canola	cytosol	27.24	13.78
KRG95394	Soybean	nucleus	25.0	13.76
CDX67463	Canola	cytosol	20.19	13.58
CDY22883	Canola	cytosol	28.21	13.48
CDX74183	Canola	cytosol	14.1	12.79
CDY40661	Canola	cytosol	30.77	12.6
CDY50383	Canola	cytosol	32.37	11.98
CDX74184	Canola	plasma membrane	15.38	11.71
CDY22035	Canola	cytosol	31.09	10.95
CDY43524	Canola	cytosol	17.31	10.67
CDY06776	Canola	cytosol	9.62	10.53
CDY22052	Canola	nucleus	20.51	10.11
CDY48718	Canola	cytosol	11.86	9.97
CDY63460	Canola	cytosol, mitochondrion	13.14	9.86
CDY52789	Canola	cytosol	12.82	9.85
CDY50382	Canola	cytosol	30.77	9.68
CDX97701	Canola	cytosol	6.09	8.96
CDY29992	Canola	cytosol	7.37	8.78
CDX82703	Canola	cytosol	25.96	8.39

Protein Annotations

EnsemblPlants:CDY36353	EnsemblPlantsGene:GSBRNA2T00060380001	GO:A0A078HHU1	InterPro:DC1	PANTHER:PTHR32410	PFAM:PF03107
ProteinID:CDY36353	ProteinID:CDY36353.1	SUPFAM:SSF57889	UniParc:UPI0004EEE7CB	UniProt:A0A078HHU1	MapMan:35.2

Description

BnaC04g32610DBnaC04g32610D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HHU1]

Coordinates

chrLK032374:+:4664..5806

Molecular Weight (calculated)

35578.0 Da

IEP (calculated)

8.191

GRAVY (calculated)

-0.322

Length

312 amino acids

Sequence
(BLAST)

001: MKEKNSLPSF LNVPNAISSS TRNVSSYLQR LITHSFHPQH PLWLVKRESL PDQNGCMCCS LCGEQLMLLV YRCLICDFKL DMSCAKNPPL LEIDHPKPAK
101: KIKKARELEN KPSKGDDDDY PFKIVEDHFT HEHYLAFHKD GKVSDVSKRF QACKLPVVYN PYFCCFKGCE FFLHEGCANL PRKKSSILHN HPLELDGKST
201: ARTEFHAKHC CCSACGFKYS CCDFNLDVGC ASIPLPFKTS IHEHLLTIKS NSLQICSVCK LWASPVLSCG FHLGFDCAQL PKLARHKYDD HLLSLDFVKD
301: ETCEGARYVR RR

Best Arabidopsis Sequence Match ( AT3G45840.1 )
(BLAST)

001: MAILSIKLPI HIHPLSLSFR FHDRCEGCSF RNQGEYYGGY RCNDSDCNRV LFHKECAESP LEINHPSHPE HPLRLTERPP RYECDICGIH HLADVPYFYH
101: CSICDFNVDT SCARKPPPPP THDFQDLPFV FPKISGIYNC CGVCGHSVVA GKYYYSLPSR DQYAHLECIY HEKKVNLPFH PNHPLELTIS KSLPDDAEKA
201: CVLCGVRSEI VMYYCLICDF SMCLNCVRSP PPLTAKSLIY VFNVMLWSIE VVLAYRIESV SWGFICPKYV VHSQCATSYN VWDGIELEGI PEEAEDLPFK
301: VVGDNLINHF SHEKHNLRLT NEDIIYDESS RCEACIFPRN SGSIYCCDQC TFFLHEKCAH LPMKRRHLIY NRPFTLHARG KDLQIDWFSC DACGKQSTGF
401: RYISDDLMLD VHCSSVSEPF VHDGHVHPLY YKEEASTKCD SCHKLSYNML GCDVCDFSLD FCCANLPKTL KHKYDRHPLS LCYGEKASGK YCCDICETEM
501: DPSKWFYTCD DCVVTFHIDC VFGDFSRFIA GSIFETIIYT FEVVPTKDTT RQLCSQCHSR CKTPFILKAL SQTEDYCICS FKCLSSYFSK L

Arabidopsis Description

Cysteine/Histidine-rich C1 domain family protein [Source:UniProtKB/TrEMBL;Acc:F4J6S4]
SUBAcon: [mitochondrion,peroxisome,nucleus,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.