Factsheet for Bra025569.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 2
cytosol 1
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY36353	Canola	plastid	48.78	83.33
Bra025591.1-P	Field mustard	nucleus	36.96	33.33
Bra040595.1-P	Field mustard	cytosol	25.89	32.17
Bra024127.1-P	Field mustard	nucleus	22.51	29.34
Bra017007.1-P	Field mustard	nucleus	29.46	26.93
Bra028463.1-P	Field mustard	cytosol	25.7	25.56
Bra020274.1-P	Field mustard	nucleus	29.08	24.76
Bra011134.1-P	Field mustard	mitochondrion	31.71	24.39
KRH67075	Soybean	nucleus	25.14	23.51
KRG95394	Soybean	nucleus	24.77	23.28
Bra040143.1-P	Field mustard	nucleus	25.89	22.55
Bra033522.1-P	Field mustard	cytosol	19.14	20.77
Bra001113.1-P	Field mustard	cytosol	15.57	18.0
Bra036288.1-P	Field mustard	cytosol, nucleus, plasma membrane	31.14	9.92

Protein Annotations

EnsemblPlants:Bra025569.1	EnsemblPlants:Bra025569.1-P	EnsemblPlantsGene:Bra025569	Gene3D:3.30.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0046872	InterPro:DC1	InterPro:IPR013083	InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR32410
PFAM:PF03107	ScanProsite:PS01359	SUPFAM:SSF57889	UniParc:UPI0002544ED2	UniProt:M4E9W3	MapMan:35.2

Description

AT5G42280 (E=8e-065) | DC1 domain-containing protein

Coordinates

chrA04:+:7794777..7796378

Molecular Weight (calculated)

60966.5 Da

IEP (calculated)

6.873

GRAVY (calculated)

-0.211

Length

533 amino acids

Sequence
(BLAST)

001: MSRVLHLSSP YDHLISQKFP IHDHPLYSTT DHGQCAGCYE GKELSAEFLE CPECDIFFHK ECIELSPEVI THSFHPQHPL WLVKRESLPD QNGCMCCSLC
101: GEQLMLLVYR CLICDFKLDM SCAKNPPLLE IDQPKVGQHK LHLLMKKVSF TCDACGFEGD RSPYMCLPCN FMYHIRCVYF PDDSQQRSYS LSPRTWSCGC
201: RYVHSDVVAC EKIKKARELE NKPSKGDDDD DYPFKIVEDK YIDHFTHEHY LAFHKDGKVS DVSKICQACK LPVVYNPYFC CYKGCEFYVH EGCANLPWKK
301: RSILHNHLLE VDGKSTARTE FHAKHFCCSA CGQFHDGFKY SCCDFNLEVG CASIPLPFKT SIHEHLLTIK SNDLQICSVC KLWASPVLSC ATCGLHLGFD
401: CAQLPKLARH KYDDHLLSLD FVKDETCEGD YWCEICEKKI GGKALFYTCN EDYCCSTFHT HCVIGALHLK LKQCFKLFSH EFEVVENSLA ALRHCCICGL
501: ECKGLEVIMS KGGDKYLCSS SCLMRNRHLL KNL

Best Arabidopsis Sequence Match ( AT2G19660.1 )
(BLAST)

001: MEKVEVPPIH NHPLLPFTRF SYKACKGCGY VGYIYGGYHC NELGCESVFH KECADPLPEI NHYSHPDHPL KLLINVEPLA SCSQCPSSFE NGYLCSICDF
101: KLDFRCATRL PLEFILEEST VHEHPIQLSD GTRDGFVQLC KTCKWGVFDA VHYKCNKCDL RFHVECTKLF PQASHVLHPQ HPLKLLRCEE APDYADNKCL
201: LCGNKFDGRI HHCDVCNFTI CGGCMENPPP LSVVSPTTHE HQLYLLSKPL GFTCNACGTQ ADQSPYFCLQ CNFMIHWECI DLPRVININR HDHRISYTRR
301: LGHGQNTCGV CRKKVDGFYG GYSCSKCSNY VVHSRCATDE DVWDMIELEG TPEEPEEDAP FEVIDDNTIK HFSHDHNLVI NKDGRILHES TLCKACVFQI
401: CSDAFYSCEN CDFILHQKCA NLPRKKRHVC DNLPFTLVTN DTSDETSCDL CWQSFTGFRY ECLTRMVTLD VRCGSIREPL VHQSHQHPLY FSKRSSKSCT
501: ECGKNMDLDI GSFSCDECDY SLDFKCALLP QKVKWHRYDD HPLYLSCGES SVDGEYWCEA CETKVNSKKW FYTCNDCGVI LHISCVVGDF SYYMPGSKIG
601: WEEDLVVSNT SMCRPFCYVC NSQCKLPSIV KVVSKADVVL YICSLNCYYN FNRSNNYSSS DW

Arabidopsis Description

Cysteine/Histidine-rich C1 domain family protein [Source:TAIR;Acc:AT2G19660]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.