Factsheet for Bra025591.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44574	Canola	cytosol	81.39	99.79
AT5G40320.1	Thale cress	nucleus	80.88	80.47
Bra040595.1-P	Field mustard	cytosol	35.87	49.42
Bra024127.1-P	Field mustard	nucleus	30.12	43.52
Bra017007.1-P	Field mustard	nucleus	39.26	39.79
Bra028463.1-P	Field mustard	cytosol	34.52	38.06
Bra025569.1-P	Field mustard	nucleus	33.33	36.96
Bra020274.1-P	Field mustard	nucleus	35.87	33.87
Bra040143.1-P	Field mustard	nucleus	35.03	33.82
Bra033522.1-P	Field mustard	cytosol	27.41	32.99
Bra011134.1-P	Field mustard	mitochondrion	38.41	32.76
Bra001113.1-P	Field mustard	cytosol	21.66	27.77
KRG95394	Soybean	nucleus	26.06	27.16
KRH67075	Soybean	nucleus	25.72	26.67
Bra036288.1-P	Field mustard	cytosol, nucleus, plasma membrane	41.12	14.52

Protein Annotations

MapMan:35.2	EnsemblPlantsGene:Bra025591	EnsemblPlants:Bra025591.1	EnsemblPlants:Bra025591.1-P	InterPro:DC1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0009987	GO:GO:0035556	GO:GO:0046872	InterPro:IPR002219	UniProt:M4E9Y4
InterPro:PE/DAG-bd	PFAM:PF03107	PFscan:PS50081	PANTHER:PTHR32410	SMART:SM00109	SMART:SM00249
SUPFAM:SSF57889	UniParc:UPI0002544D23	InterPro:Znf_PHD	SEG:seg	:	:

Description

AT5G40320 (E=4e-281) | DC1 domain-containing protein

Coordinates

chrA04:-:7633253..7635028

Molecular Weight (calculated)

67664.3 Da

IEP (calculated)

6.156

GRAVY (calculated)

-0.321

Length

591 amino acids

Sequence
(BLAST)

001: MVLVEELSDV TTSHGENDDV SSYDDDDDSL TPSMVFDQIM GPTVMLASHE HPFYIHGSSN GHCDGCPERR DNGFFGYSCP TCDLTVHKEC AESSPEINHP
101: SHRRHPLTLF KHGLPLAAAD DKCRLCGEKL GKLVYHCSIC DFSIDLYCAR NPLELVVHYP KGHEHILTLM PRLIRFTCNA CGLESDRSPY VCPQCDFMIH
201: EDCIYLPRVI SIIRHRHRIS RTYFLGSGDW TCGVCRRRVD GRYGAYCCSI CPDYAVHSKC ATRSDVWDGR ELEDEPEEND ECEEPFWVVS DGVINHFSHR
301: EHDLRLEDGL ANILGEHTRC RACVRPVYSN SFYSCMHCDD FVLHETCANL PRKQRHVLHN HQLTLYNDDS IVMDFPSTRG VFLCSACDRL CSGFRYECCN
401: IKLDVRCGSI SEPFLYECHP HPLFQTSIGS KICAVCKQES VYVLSCLDCD FVLDFKCATL PNRVRYKYDR KPLSLCYDGD KDVTGSYWCE ICEGEMDQKI
501: MFYTCESYGS TIDIHCVLGD FRYVKPRLQF EFNGKKWKVA LNGINRPGCY KCGFRCKGPF VAVRVDYDNG VVCSLSCLWK GDTFEFVRRI D

Best Arabidopsis Sequence Match ( AT5G40320.1 )
(BLAST)

001: MVLVEELSDV SSPTNEANQA YSYDDDDDDD GSLTPSMVFD QIMGTSLMLP FHEHPVYNHY SSTGQCDGCP ELRENGLHGY NCNTCGLTVH KECAESSPEI
101: NHPSHQRHPL MLLTHGLPQE AEDDKCRLCG EKVGKLVYHC SICDFSLDLF CARNPLSLVV YFRKGHEHTL TLMPRLIRFT CNACGLESDR SPYICAQCDF
201: MIHEDCIYLP RVISIIRHEH RISRTYFLGS GDWKCGVCRR RMDGRYGAYS CSICPDYAVH SRCATRRDVW DGLELEDEPE DIEECEEPFR VVSDGVINHF
301: SHREHDLRLE DGLTNRHDEN IRCRACVRPV YANTFYSCMQ CDDFILHETC ANLPRKKRHV LHNHQLTLYP DDNIVMDFPM LRGVFLCTAC RRLCSGFRYE
401: CCNIKLDVRC GSISEPFFYE CHPHPLFQTS LDSKVCETCK EESDYVLTCM DCDYVLDFEC ATLPPTVRYK YDRHPLKLCY DGDKDMAGSY WCEICEKEMD
501: QNIIFYTCES SGPTIHIECV LGDFRYVKPR LHFEFNKKKW EVALNGINRP GCYKCGFRCK GPFVAVSVDY DISYVCSLLC LWKGETLVYG SIRD

Arabidopsis Description

CHP-rich zinc finger protein-like [Source:UniProtKB/TrEMBL;Acc:Q9FNE5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.