Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra025591.1-P | Field mustard | nucleus | 80.47 | 80.88 |
| CDY44574 | Canola | cytosol | 63.97 | 78.84 |
| CDY36839 | Canola | cytosol | 78.45 | 77.02 |
| AT1G58037.1 | Thale cress | cytosol | 24.92 | 43.15 |
| AT3G27510.1 | Thale cress | cytosol | 31.82 | 42.95 |
| AT2G04500.1 | Thale cress | cytosol | 35.52 | 42.63 |
| AT4G01925.1 | Thale cress | cytosol | 20.03 | 42.5 |
| AT5G54030.1 | Thale cress | cytosol | 29.46 | 41.77 |
| AT4G14980.1 | Thale cress | cytosol | 38.22 | 41.65 |
| AT5G45730.1 | Thale cress | nucleus | 39.06 | 41.43 |
| AT5G44770.1 | Thale cress | cytosol, nucleus, peroxisome | 37.37 | 41.04 |
| AT4G11540.1 | Thale cress | cytosol | 35.86 | 40.57 |
| AT5G54050.1 | Thale cress | nucleus | 37.88 | 38.79 |
| AT3G06990.1 | Thale cress | nucleus | 35.19 | 38.78 |
| AT2G43220.1 | Thale cress | peroxisome | 35.02 | 38.66 |
| AT4G16015.1 | Thale cress | cytosol | 34.51 | 38.32 |
| AT4G11550.1 | Thale cress | cytosol | 42.76 | 38.02 |
| AT5G22355.1 | Thale cress | cytosol | 42.42 | 37.95 |
| AT4G01760.1 | Thale cress | cytosol | 42.26 | 37.63 |
| AT3G07000.1 | Thale cress | cytosol | 36.36 | 37.63 |
| AT4G01740.1 | Thale cress | cytosol | 41.25 | 37.58 |
| AT4G01930.1 | Thale cress | cytosol | 41.25 | 37.58 |
| AT5G54040.1 | Thale cress | cytosol | 37.54 | 37.42 |
| AT5G54020.2 | Thale cress | nucleus | 37.04 | 37.41 |
| AT3G48400.1 | Thale cress | cytosol | 38.89 | 37.32 |
| AT3G27480.1 | Thale cress | cytosol, nucleus, peroxisome | 37.88 | 37.25 |
| AT4G02190.1 | Thale cress | cytosol | 41.08 | 37.03 |
| AT4G11390.2 | Thale cress | cytosol | 33.84 | 36.81 |
| AT3G46800.1 | Thale cress | cytosol | 41.75 | 36.36 |
| AT3G28650.1 | Thale cress | cytosol | 40.57 | 36.24 |
| AT4G01350.1 | Thale cress | cytosol | 39.73 | 36.2 |
| AT4G01920.1 | Thale cress | cytosol | 40.07 | 36.17 |
| AT3G27473.1 | Thale cress | cytosol | 40.07 | 35.95 |
| AT4G01910.1 | Thale cress | cytosol | 39.39 | 35.94 |
| AT2G19660.2 | Thale cress | nucleus | 41.75 | 35.94 |
| AT3G27490.1 | Thale cress | cytosol | 41.25 | 35.92 |
| AT2G04680.1 | Thale cress | cytosol | 39.56 | 35.77 |
| AT3G46810.1 | Thale cress | cytosol | 41.25 | 35.71 |
| AT1G65180.1 | Thale cress | nucleus | 39.23 | 35.68 |
| AT5G42840.1 | Thale cress | cytosol | 40.24 | 35.62 |
| AT3G43890.1 | Thale cress | cytosol | 39.56 | 35.55 |
| AT2G19650.1 | Thale cress | cytosol | 40.74 | 35.48 |
| AT5G29624.1 | Thale cress | cytosol | 28.96 | 35.25 |
| AT4G13992.1 | Thale cress | mitochondrion | 37.71 | 34.89 |
| AT1G69150.1 | Thale cress | cytosol | 30.3 | 34.82 |
| AT5G59930.1 | Thale cress | cytosol, nucleus, plasma membrane | 38.22 | 34.6 |
| AT3G27500.1 | Thale cress | cytosol | 40.07 | 34.39 |
| AT5G37620.1 | Thale cress | cytosol | 37.71 | 34.36 |
| AT3G45530.1 | Thale cress | cytosol | 39.56 | 33.96 |
| AT3G45840.1 | Thale cress | mitochondrion, nucleus, peroxisome, vacuole | 33.33 | 33.5 |
| AT5G59940.1 | Thale cress | cytosol | 36.2 | 33.03 |
| AT5G59920.1 | Thale cress | cytosol | 39.23 | 32.82 |
| KRG95394 | Soybean | nucleus | 25.93 | 27.16 |
| KRH67075 | Soybean | nucleus | 25.76 | 26.84 |
| AT4G02180.1 | Thale cress | cytosol | 42.76 | 25.68 |
Protein Annotations
| Gene3D:3.30.60.20 | MapMan:35.2 | EntrezGene:834030 | ProteinID:AED94533.1 | ArrayExpress:AT5G40320 | EnsemblPlantsGene:AT5G40320 |
| RefSeq:AT5G40320 | TAIR:AT5G40320 | RefSeq:AT5G40320-TAIR-G | EnsemblPlants:AT5G40320.1 | TAIR:AT5G40320.1 | Unigene:At.55276 |
| ProteinID:BAB11587.1 | InterPro:DC1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0035556 |
| GO:GO:0046872 | InterPro:IPR002219 | RefSeq:NP_198848.1 | InterPro:PE/DAG-bd | PFAM:PF03107 | PFscan:PS50081 |
| PANTHER:PTHR32410 | UniProt:Q9FNE5 | SMART:SM00109 | SMART:SM00249 | SUPFAM:SSF57889 | UniParc:UPI00000A3E55 |
| InterPro:Znf_PHD | SEG:seg | : | : | : | : |
Description
CHP-rich zinc finger protein-like [Source:UniProtKB/TrEMBL;Acc:Q9FNE5]
Coordinates
chr5:+:16121708..16123556
Molecular Weight (calculated)
68521.3 Da
IEP (calculated)
5.512
GRAVY (calculated)
-0.377
Length
594 amino acids
Sequence
(BLAST)
(BLAST)
001: MVLVEELSDV SSPTNEANQA YSYDDDDDDD GSLTPSMVFD QIMGTSLMLP FHEHPVYNHY SSTGQCDGCP ELRENGLHGY NCNTCGLTVH KECAESSPEI
101: NHPSHQRHPL MLLTHGLPQE AEDDKCRLCG EKVGKLVYHC SICDFSLDLF CARNPLSLVV YFRKGHEHTL TLMPRLIRFT CNACGLESDR SPYICAQCDF
201: MIHEDCIYLP RVISIIRHEH RISRTYFLGS GDWKCGVCRR RMDGRYGAYS CSICPDYAVH SRCATRRDVW DGLELEDEPE DIEECEEPFR VVSDGVINHF
301: SHREHDLRLE DGLTNRHDEN IRCRACVRPV YANTFYSCMQ CDDFILHETC ANLPRKKRHV LHNHQLTLYP DDNIVMDFPM LRGVFLCTAC RRLCSGFRYE
401: CCNIKLDVRC GSISEPFFYE CHPHPLFQTS LDSKVCETCK EESDYVLTCM DCDYVLDFEC ATLPPTVRYK YDRHPLKLCY DGDKDMAGSY WCEICEKEMD
501: QNIIFYTCES SGPTIHIECV LGDFRYVKPR LHFEFNKKKW EVALNGINRP GCYKCGFRCK GPFVAVSVDY DISYVCSLLC LWKGETLVYG SIRD
101: NHPSHQRHPL MLLTHGLPQE AEDDKCRLCG EKVGKLVYHC SICDFSLDLF CARNPLSLVV YFRKGHEHTL TLMPRLIRFT CNACGLESDR SPYICAQCDF
201: MIHEDCIYLP RVISIIRHEH RISRTYFLGS GDWKCGVCRR RMDGRYGAYS CSICPDYAVH SRCATRRDVW DGLELEDEPE DIEECEEPFR VVSDGVINHF
301: SHREHDLRLE DGLTNRHDEN IRCRACVRPV YANTFYSCMQ CDDFILHETC ANLPRKKRHV LHNHQLTLYP DDNIVMDFPM LRGVFLCTAC RRLCSGFRYE
401: CCNIKLDVRC GSISEPFFYE CHPHPLFQTS LDSKVCETCK EESDYVLTCM DCDYVLDFEC ATLPPTVRYK YDRHPLKLCY DGDKDMAGSY WCEICEKEMD
501: QNIIFYTCES SGPTIHIECV LGDFRYVKPR LHFEFNKKKW EVALNGINRP GCYKCGFRCK GPFVAVSVDY DISYVCSLLC LWKGETLVYG SIRD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.