Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 1
- golgi 1
- extracellular 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G46810.1 | Thale cress | cytosol | 60.41 | 60.06 |
| AT5G37620.1 | Thale cress | cytosol | 52.05 | 54.45 |
| AT2G04680.1 | Thale cress | cytosol | 52.05 | 54.03 |
| AT2G19660.2 | Thale cress | nucleus | 53.52 | 52.9 |
| AT2G19650.1 | Thale cress | cytosol | 51.76 | 51.76 |
| AT4G01925.1 | Thale cress | cytosol | 19.21 | 46.79 |
| AT5G22355.1 | Thale cress | cytosol | 43.84 | 45.03 |
| AT3G48400.1 | Thale cress | cytosol | 39.59 | 43.62 |
| AT4G14980.1 | Thale cress | cytosol | 34.75 | 43.49 |
| AT1G58037.1 | Thale cress | cytosol | 21.85 | 43.44 |
| AT5G44770.1 | Thale cress | cytosol, nucleus, peroxisome | 34.31 | 43.25 |
| AT4G01930.1 | Thale cress | cytosol | 41.35 | 43.25 |
| AT4G11540.1 | Thale cress | cytosol | 33.28 | 43.24 |
| AT3G27510.1 | Thale cress | cytosol | 27.86 | 43.18 |
| AT4G01910.1 | Thale cress | cytosol | 41.06 | 43.01 |
| AT4G01760.1 | Thale cress | cytosol | 41.79 | 42.73 |
| AT4G11550.1 | Thale cress | cytosol | 41.64 | 42.52 |
| AT2G04500.1 | Thale cress | cytosol | 30.79 | 42.42 |
| AT4G01920.1 | Thale cress | cytosol | 40.62 | 42.1 |
| AT4G02190.1 | Thale cress | cytosol | 40.62 | 42.03 |
| AT5G59940.1 | Thale cress | cytosol | 40.03 | 41.94 |
| AT5G40320.1 | Thale cress | nucleus | 36.36 | 41.75 |
| AT2G43220.1 | Thale cress | peroxisome | 32.84 | 41.64 |
| AT4G01740.1 | Thale cress | cytosol | 39.59 | 41.41 |
| AT5G54030.1 | Thale cress | cytosol | 25.37 | 41.29 |
| AT4G01350.1 | Thale cress | cytosol | 39.44 | 41.26 |
| AT3G27480.1 | Thale cress | cytosol, nucleus, peroxisome | 36.51 | 41.23 |
| AT5G54050.1 | Thale cress | nucleus | 35.04 | 41.21 |
| AT5G59930.1 | Thale cress | cytosol, nucleus, plasma membrane | 39.44 | 41.01 |
| AT1G65180.1 | Thale cress | nucleus | 38.86 | 40.58 |
| AT4G16015.1 | Thale cress | cytosol | 31.82 | 40.56 |
| AT5G45730.1 | Thale cress | nucleus | 33.28 | 40.54 |
| AT3G07000.1 | Thale cress | cytosol | 33.87 | 40.24 |
| AT3G06990.1 | Thale cress | nucleus | 31.67 | 40.07 |
| AT3G28650.1 | Thale cress | cytosol | 38.56 | 39.55 |
| AT3G45840.1 | Thale cress | mitochondrion, nucleus, peroxisome, vacuole | 34.16 | 39.42 |
| AT3G27490.1 | Thale cress | cytosol | 39.15 | 39.15 |
| AT5G54020.2 | Thale cress | nucleus | 33.72 | 39.12 |
| AT4G13992.1 | Thale cress | mitochondrion | 36.8 | 39.1 |
| AT3G27473.1 | Thale cress | cytosol | 37.83 | 38.97 |
| AT5G54040.1 | Thale cress | cytosol | 34.02 | 38.93 |
| AT1G69150.1 | Thale cress | cytosol | 29.47 | 38.88 |
| AT3G43890.1 | Thale cress | cytosol | 37.24 | 38.43 |
| AT5G59920.1 | Thale cress | cytosol | 39.74 | 38.17 |
| AT3G27500.1 | Thale cress | cytosol | 38.71 | 38.15 |
| AT3G45530.1 | Thale cress | cytosol | 38.56 | 38.01 |
| AT5G29624.1 | Thale cress | cytosol | 27.13 | 37.91 |
| AT5G42840.1 | Thale cress | cytosol | 36.95 | 37.56 |
| AT4G11390.2 | Thale cress | cytosol | 28.89 | 36.08 |
| AT4G02180.1 | Thale cress | cytosol | 39.74 | 27.4 |
| KRG95394 | Soybean | nucleus | 22.14 | 26.63 |
| KRH67075 | Soybean | nucleus | 21.7 | 25.96 |
Protein Annotations
| MapMan:35.2 | EntrezGene:823833 | ProteinID:AEE78206.1 | ArrayExpress:AT3G46800 | EnsemblPlantsGene:AT3G46800 | RefSeq:AT3G46800 |
| TAIR:AT3G46800 | RefSeq:AT3G46800-TAIR-G | EnsemblPlants:AT3G46800.1 | TAIR:AT3G46800.1 | Unigene:At.65258 | ProteinID:CAB51185.1 |
| InterPro:DC1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0035556 | GO:GO:0046872 |
| InterPro:IPR002219 | RefSeq:NP_190264.1 | InterPro:PE/DAG-bd | PFAM:PF03107 | PO:PO:0009005 | PFscan:PS50081 |
| UniProt:Q9STF4 | SMART:SM00109 | SMART:SM00249 | SUPFAM:SSF57889 | UniParc:UPI000009CA8E | InterPro:Znf_PHD |
| SEG:seg | : | : | : | : | : |
Description
Cysteine/Histidine-rich C1 domain family protein [Source:UniProtKB/TrEMBL;Acc:Q9STF4]
Coordinates
chr3:-:17234494..17236668
Molecular Weight (calculated)
77888.2 Da
IEP (calculated)
7.814
GRAVY (calculated)
-0.353
Length
682 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKVELPVHE HPLFIFDRIC MDTCKGCSVF GYFYGGYVCN EVGCDTLFHK ECVESVPEIK HPSHPQHPLK LNLKCGRFCC SLCISGLQVG YHCSICDFNV
101: HLVCARRPPS STSSSSSSSP LPTSVDNSKV HQHPLLLSKN VETFLLKEGR NCNMCNTNIK INEKQLCECR LCNILFHLDC VGLIPNVYQT SHPKHPLKFL
201: QYGAPEYAHE KCLLCKKKFK KLSNNYDRVY HCDVCNVTIC KDYCMAKPPP VSVVSPTTHE HQLHLVPRLV NFTCNACGTA GDRSPYFCLQ CNFMIHRACI
301: DLPRVININR HNHRISYTSL LGHGNWTCGV CRKKVDGFYG AYSCSKCPSY AVHARCATRK DVWYKVELEG TPEEEEIAPF EVVDENLIKH FIHGHNLRLN
401: KDGNHESKFC EACASKINND PFYGCEQCDF ILHETCASLP RKIRHVSNNK PLILSTDTYL KDSPRQRRHC SACFQNFSGF RYETQSRNLF GSATLDVRCS
501: SIYEPFLHES HPHPLYFSLE GDTKCSACDI TYSARDMLCC DECEFRLDFR CATLPRKVMN QRYDDHPLYL SYGENKEDGQ LWCEVCETKV DPKEWLYTCN
601: LCGIILHISC VVGDFSYHVP GHISSNKIAN GVVVPNTSIC RPHCSRCSSR CKLPYILQIN DFYFCSNKCC GNTRNPRGRN YY
101: HLVCARRPPS STSSSSSSSP LPTSVDNSKV HQHPLLLSKN VETFLLKEGR NCNMCNTNIK INEKQLCECR LCNILFHLDC VGLIPNVYQT SHPKHPLKFL
201: QYGAPEYAHE KCLLCKKKFK KLSNNYDRVY HCDVCNVTIC KDYCMAKPPP VSVVSPTTHE HQLHLVPRLV NFTCNACGTA GDRSPYFCLQ CNFMIHRACI
301: DLPRVININR HNHRISYTSL LGHGNWTCGV CRKKVDGFYG AYSCSKCPSY AVHARCATRK DVWYKVELEG TPEEEEIAPF EVVDENLIKH FIHGHNLRLN
401: KDGNHESKFC EACASKINND PFYGCEQCDF ILHETCASLP RKIRHVSNNK PLILSTDTYL KDSPRQRRHC SACFQNFSGF RYETQSRNLF GSATLDVRCS
501: SIYEPFLHES HPHPLYFSLE GDTKCSACDI TYSARDMLCC DECEFRLDFR CATLPRKVMN QRYDDHPLYL SYGENKEDGQ LWCEVCETKV DPKEWLYTCN
601: LCGIILHISC VVGDFSYHVP GHISSNKIAN GVVVPNTSIC RPHCSRCSSR CKLPYILQIN DFYFCSNKCC GNTRNPRGRN YY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.