Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G54030.1 | Thale cress | cytosol | 53.1 | 73.51 |
| AT5G29624.1 | Thale cress | cytosol | 59.14 | 70.29 |
| Bra040595.1-P | Field mustard | cytosol | 51.21 | 69.23 |
| AT5G54020.2 | Thale cress | nucleus | 68.1 | 67.18 |
| AT5G54040.1 | Thale cress | cytosol | 68.28 | 66.44 |
| AT4G14980.1 | Thale cress | cytosol | 61.03 | 64.95 |
| CDY51540 | Canola | nucleus | 56.9 | 64.33 |
| CDY28703 | Canola | cytosol | 54.31 | 63.25 |
| AT5G44770.1 | Thale cress | cytosol, nucleus, peroxisome | 57.93 | 62.11 |
| AT2G04500.1 | Thale cress | cytosol | 52.76 | 61.82 |
| AT1G58037.1 | Thale cress | cytosol | 29.48 | 49.85 |
| AT5G45730.1 | Thale cress | nucleus | 46.38 | 48.04 |
| AT3G06990.1 | Thale cress | nucleus | 43.1 | 46.38 |
| AT3G07000.1 | Thale cress | cytosol | 44.31 | 44.77 |
| AT4G01925.1 | Thale cress | cytosol | 20.34 | 42.14 |
| AT2G43220.1 | Thale cress | peroxisome | 37.93 | 40.89 |
| AT4G11540.1 | Thale cress | cytosol | 35.69 | 39.43 |
| AT3G27510.1 | Thale cress | cytosol | 29.14 | 38.41 |
| AT5G40320.1 | Thale cress | nucleus | 38.79 | 37.88 |
| AT4G01910.1 | Thale cress | cytosol | 41.72 | 37.17 |
| AT4G16015.1 | Thale cress | cytosol | 33.62 | 36.45 |
| AT4G01930.1 | Thale cress | cytosol | 40.69 | 36.2 |
| AT4G01920.1 | Thale cress | cytosol | 40.86 | 36.02 |
| AT5G22355.1 | Thale cress | cytosol | 41.03 | 35.84 |
| AT4G11390.2 | Thale cress | cytosol | 33.1 | 35.16 |
| AT3G46800.1 | Thale cress | cytosol | 41.21 | 35.04 |
| AT1G65180.1 | Thale cress | nucleus | 39.31 | 34.92 |
| AT4G01740.1 | Thale cress | cytosol | 38.79 | 34.51 |
| AT4G01760.1 | Thale cress | cytosol | 39.14 | 34.03 |
| AT4G02190.1 | Thale cress | cytosol | 38.62 | 33.99 |
| AT4G11550.1 | Thale cress | cytosol | 38.79 | 33.68 |
| AT5G59930.1 | Thale cress | cytosol, nucleus, plasma membrane | 37.93 | 33.54 |
| AT3G48400.1 | Thale cress | cytosol | 35.69 | 33.44 |
| AT3G43890.1 | Thale cress | cytosol | 37.59 | 32.98 |
| AT3G46810.1 | Thale cress | cytosol | 38.79 | 32.8 |
| AT3G27480.1 | Thale cress | cytosol, nucleus, peroxisome | 34.14 | 32.78 |
| AT4G01350.1 | Thale cress | cytosol | 36.72 | 32.67 |
| AT3G27473.1 | Thale cress | cytosol | 37.24 | 32.63 |
| AT3G28650.1 | Thale cress | cytosol | 37.24 | 32.48 |
| AT5G59940.1 | Thale cress | cytosol | 36.38 | 32.41 |
| AT2G19650.1 | Thale cress | cytosol | 38.1 | 32.4 |
| AT2G19660.2 | Thale cress | nucleus | 38.45 | 32.32 |
| AT1G69150.1 | Thale cress | cytosol | 28.79 | 32.3 |
| AT2G04680.1 | Thale cress | cytosol | 35.86 | 31.66 |
| AT3G27490.1 | Thale cress | cytosol | 37.07 | 31.52 |
| AT5G59920.1 | Thale cress | cytosol | 38.45 | 31.41 |
| AT4G13992.1 | Thale cress | mitochondrion | 34.66 | 31.31 |
| AT3G45840.1 | Thale cress | mitochondrion, nucleus, peroxisome, vacuole | 31.9 | 31.3 |
| AT5G42840.1 | Thale cress | cytosol | 36.21 | 31.3 |
| AT3G27500.1 | Thale cress | cytosol | 37.07 | 31.07 |
| AT5G37620.1 | Thale cress | cytosol | 34.83 | 30.98 |
| AT3G45530.1 | Thale cress | cytosol | 35.69 | 29.91 |
| KRG95394 | Soybean | nucleus | 23.28 | 23.81 |
| AT4G02180.1 | Thale cress | cytosol | 39.31 | 23.05 |
| KRH67075 | Soybean | nucleus | 22.59 | 22.98 |
Protein Annotations
| Gene3D:3.30.60.20 | MapMan:35.2 | EntrezGene:835488 | ProteinID:AED96442.1 | ArrayExpress:AT5G54050 | EnsemblPlantsGene:AT5G54050 |
| RefSeq:AT5G54050 | TAIR:AT5G54050 | RefSeq:AT5G54050-TAIR-G | EnsemblPlants:AT5G54050.1 | TAIR:AT5G54050.1 | Unigene:At.49794 |
| InterPro:DC1 | UniProt:F4JYT3 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0035556 |
| GO:GO:0046872 | InterPro:IPR002219 | RefSeq:NP_200216.2 | InterPro:PE/DAG-bd | PFAM:PF03107 | ScanProsite:PS01359 |
| PANTHER:PTHR32410 | SMART:SM00109 | SUPFAM:SSF57889 | UniParc:UPI000034F300 | InterPro:Zinc_finger_PHD-type_CS | SEG:seg |
Description
Cysteine/Histidine-rich C1 domain family protein [Source:UniProtKB/TrEMBL;Acc:F4JYT3]
Coordinates
chr5:-:21933601..21936053
Molecular Weight (calculated)
67071.1 Da
IEP (calculated)
6.530
GRAVY (calculated)
-0.349
Length
580 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSTDVEVVT FPFHDHPLSC CDDPVAAEFY CSLCSHYHSL SWQVFRSGVW QNEVEPWFRT SEYHGPALRI SNNINYHCKE CDIMMHKDCV DRLFNQPFIC
101: NHILKIFVST ISPLDSIVDD LCHFCRFEVH HMFLRCTICN ISLHIGCVAE PPPLTISEPK HHKHSLSLLL RLVTFTCNAC GVEGDRNPYV CLECNLMVHK
201: DCVENLPRVI SINRHDHRIS HTFHLGEKEG DWECGVCRKM INWVYGGYKC SRCPSYAVHS KCATKKEVWD GLELEDVPEE EEEIKDPFKV INEKGDIVHF
301: SHEKHILRLD ENYVTDDANM RCRCCILAIN GDPCYKCMEC DFILHKACAN LPRKRRHLLH NHKLTLSSRR IDEDNFLECS ACRIYTDGFI YECLHEDCEN
401: KNAYDVRCSS VSEPFHHDLH QHPLYFTLQS SRRCQACNKE IKDDPLNCTV CDEYSLCMRC ATLPRKVKHR CDDHFLSLCQ GVGNASGDLW CDICETKTDP
501: SVRYYTCDEC GLSLHIDCVL GDLYYMKLGH QNPEMEIHPN NGATRPSCAR CGFRCKFPFF VRGTKEQSAL YVCSIDLCPR
101: NHILKIFVST ISPLDSIVDD LCHFCRFEVH HMFLRCTICN ISLHIGCVAE PPPLTISEPK HHKHSLSLLL RLVTFTCNAC GVEGDRNPYV CLECNLMVHK
201: DCVENLPRVI SINRHDHRIS HTFHLGEKEG DWECGVCRKM INWVYGGYKC SRCPSYAVHS KCATKKEVWD GLELEDVPEE EEEIKDPFKV INEKGDIVHF
301: SHEKHILRLD ENYVTDDANM RCRCCILAIN GDPCYKCMEC DFILHKACAN LPRKRRHLLH NHKLTLSSRR IDEDNFLECS ACRIYTDGFI YECLHEDCEN
401: KNAYDVRCSS VSEPFHHDLH QHPLYFTLQS SRRCQACNKE IKDDPLNCTV CDEYSLCMRC ATLPRKVKHR CDDHFLSLCQ GVGNASGDLW CDICETKTDP
501: SVRYYTCDEC GLSLHIDCVL GDLYYMKLGH QNPEMEIHPN NGATRPSCAR CGFRCKFPFF VRGTKEQSAL YVCSIDLCPR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.