Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G22355.1 | Thale cress | cytosol | 52.99 | 49.4 |
| CDY41709 | Canola | peroxisome | 41.84 | 49.24 |
| AT4G01350.1 | Thale cress | cytosol | 48.47 | 46.01 |
| AT4G11540.1 | Thale cress | cytosol | 37.96 | 44.76 |
| AT3G45840.1 | Thale cress | mitochondrion, nucleus, peroxisome, vacuole | 42.49 | 44.5 |
| AT5G59940.1 | Thale cress | cytosol | 46.37 | 44.09 |
| AT5G59930.1 | Thale cress | cytosol, nucleus, plasma membrane | 46.04 | 43.45 |
| AT5G59920.1 | Thale cress | cytosol | 48.95 | 42.68 |
| AT1G58037.1 | Thale cress | cytosol | 23.59 | 42.57 |
| AT4G01925.1 | Thale cress | cytosol | 19.06 | 42.14 |
| AT2G19660.2 | Thale cress | nucleus | 46.53 | 41.74 |
| AT2G04680.1 | Thale cress | cytosol | 43.46 | 40.94 |
| AT5G37620.1 | Thale cress | cytosol | 42.65 | 40.49 |
| AT3G46810.1 | Thale cress | cytosol | 44.75 | 40.38 |
| AT5G54030.1 | Thale cress | cytosol | 26.98 | 39.86 |
| AT3G46800.1 | Thale cress | cytosol | 43.62 | 39.59 |
| AT4G01910.1 | Thale cress | cytosol | 41.52 | 39.48 |
| AT4G01930.1 | Thale cress | cytosol | 41.36 | 39.26 |
| AT4G11550.1 | Thale cress | cytosol | 42.33 | 39.22 |
| AT4G16015.1 | Thale cress | cytosol | 33.76 | 39.07 |
| AT2G19650.1 | Thale cress | cytosol | 42.97 | 39.0 |
| AT5G40320.1 | Thale cress | nucleus | 37.32 | 38.89 |
| AT4G14980.1 | Thale cress | cytosol | 34.09 | 38.72 |
| AT4G01760.1 | Thale cress | cytosol | 41.68 | 38.68 |
| AT4G02190.1 | Thale cress | cytosol | 40.71 | 38.24 |
| AT3G27480.1 | Thale cress | cytosol, nucleus, peroxisome | 37.0 | 37.91 |
| AT4G01920.1 | Thale cress | cytosol | 40.23 | 37.84 |
| AT1G69150.1 | Thale cress | cytosol | 31.5 | 37.72 |
| AT5G29624.1 | Thale cress | cytosol | 29.73 | 37.7 |
| AT1G65180.1 | Thale cress | nucleus | 39.58 | 37.52 |
| AT2G43220.1 | Thale cress | peroxisome | 32.31 | 37.17 |
| AT4G01740.1 | Thale cress | cytosol | 39.1 | 37.12 |
| AT5G44770.1 | Thale cress | cytosol, nucleus, peroxisome | 31.99 | 36.6 |
| AT3G27510.1 | Thale cress | cytosol | 25.85 | 36.36 |
| AT3G06990.1 | Thale cress | nucleus | 31.5 | 36.18 |
| AT4G13992.1 | Thale cress | mitochondrion | 37.16 | 35.83 |
| AT2G04500.1 | Thale cress | cytosol | 28.59 | 35.76 |
| AT3G07000.1 | Thale cress | cytosol | 33.12 | 35.71 |
| AT5G54050.1 | Thale cress | nucleus | 33.44 | 35.69 |
| AT3G27473.1 | Thale cress | cytosol | 37.96 | 35.5 |
| AT3G28650.1 | Thale cress | cytosol | 38.13 | 35.49 |
| AT5G54020.2 | Thale cress | nucleus | 33.6 | 35.37 |
| AT5G45730.1 | Thale cress | nucleus | 31.66 | 35.0 |
| AT3G43890.1 | Thale cress | cytosol | 36.67 | 34.34 |
| AT5G54040.1 | Thale cress | cytosol | 32.31 | 33.56 |
| AT5G42840.1 | Thale cress | cytosol | 36.35 | 33.53 |
| AT3G27490.1 | Thale cress | cytosol | 36.83 | 33.43 |
| AT3G27500.1 | Thale cress | cytosol | 37.32 | 33.38 |
| AT3G45530.1 | Thale cress | cytosol | 37.16 | 33.24 |
| AT4G11390.2 | Thale cress | cytosol | 28.11 | 31.87 |
| KRG95394 | Soybean | nucleus | 24.56 | 26.81 |
| KRH67075 | Soybean | nucleus | 24.23 | 26.32 |
| AT4G02180.1 | Thale cress | cytosol | 41.36 | 25.88 |
Protein Annotations
| MapMan:35.2 | EntrezGene:823998 | ProteinID:AEE78412.1 | ArrayExpress:AT3G48400 | EnsemblPlantsGene:AT3G48400 | RefSeq:AT3G48400 |
| TAIR:AT3G48400 | RefSeq:AT3G48400-TAIR-G | EnsemblPlants:AT3G48400.1 | TAIR:AT3G48400.1 | Unigene:At.53832 | InterPro:DC1 |
| UniProt:F4JDY6 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0046872 | RefSeq:NP_680115.1 |
| PFAM:PF03107 | SUPFAM:SSF57889 | UniParc:UPI00001636E0 | SEG:seg | : | : |
Description
Cysteine/Histidine-rich C1 domain family protein [Source:UniProtKB/TrEMBL;Acc:F4JDY6]
Coordinates
chr3:+:17923678..17925589
Molecular Weight (calculated)
70414.8 Da
IEP (calculated)
6.828
GRAVY (calculated)
-0.332
Length
619 amino acids
Sequence
(BLAST)
(BLAST)
001: MERSVDLPIH KHPLYHSSRF INGRCRGCKQ TSPIYSGYRC NDSDCNHVWY HKECGESLPE INHPSHLEHP LCLIDYRGSG TCAFCGAFLF GPTYHCWICA
101: FNIDIACARK QLPPLAAIEN PKCHNHSLVL LEKQVKKDHC GVCKKTVFGM YPYVCLECDV YFHVECINIS REVHHSSHTN HTLELFGSES LPDSAQKTCL
201: LCDDVSDHLI YHCSVCNFSI CVYCAINPPP LAIEHLKTHE HTLTLLPRQV KFICNACGMK GDGCPYFCLG CGYLIHRKCI DLPRVININR HDHRISLTHH
301: LGLQYSECGV CRQSVNGYYG GYSCSLCPNY VVHPQCAMKD DVWDGIELEG TPEDSEQDTA PFEVVDDNTI KHFSHEKHNL MLNKNGIITQ HDEITRCQAC
401: VLPLSSDPSY SCGQCDYVLH ETCANLPRKK RHVFNNKPFT LHTGGKDSSR NWFECDACRT ISNGFRYVSG DWILDVHCGS MSEPLLHDGH SHPLYYYRRQ
501: GKSCRSCHNK VVKPRVLCCD TCDFDLDFYC ANLPKTVKHC YDEHPLSLCH GEDDVIKDNK YWCDICETET DPKKWFYTCY DCGGGTLMSM DVSMKLFLTA
601: RVLDHSATNA ILDVKIASF
101: FNIDIACARK QLPPLAAIEN PKCHNHSLVL LEKQVKKDHC GVCKKTVFGM YPYVCLECDV YFHVECINIS REVHHSSHTN HTLELFGSES LPDSAQKTCL
201: LCDDVSDHLI YHCSVCNFSI CVYCAINPPP LAIEHLKTHE HTLTLLPRQV KFICNACGMK GDGCPYFCLG CGYLIHRKCI DLPRVININR HDHRISLTHH
301: LGLQYSECGV CRQSVNGYYG GYSCSLCPNY VVHPQCAMKD DVWDGIELEG TPEDSEQDTA PFEVVDDNTI KHFSHEKHNL MLNKNGIITQ HDEITRCQAC
401: VLPLSSDPSY SCGQCDYVLH ETCANLPRKK RHVFNNKPFT LHTGGKDSSR NWFECDACRT ISNGFRYVSG DWILDVHCGS MSEPLLHDGH SHPLYYYRRQ
501: GKSCRSCHNK VVKPRVLCCD TCDFDLDFYC ANLPKTVKHC YDEHPLSLCH GEDDVIKDNK YWCDICETET DPKKWFYTCY DCGGGTLMSM DVSMKLFLTA
601: RVLDHSATNA ILDVKIASF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.