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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
AT1G69150.1 Thale cress cytosol 65.2 83.37
AT1G65180.1 Thale cress nucleus 61.42 62.17
AT4G01925.1 Thale cress cytosol 23.45 55.36
AT4G11540.1 Thale cress cytosol 40.54 51.05
AT4G01760.1 Thale cress cytosol 50.53 50.08
AT4G01930.1 Thale cress cytosol 48.87 49.54
AT4G01910.1 Thale cress cytosol 48.11 48.85
AT4G01920.1 Thale cress cytosol 48.56 48.78
AT4G11550.1 Thale cress cytosol 48.56 48.05
AT4G02190.1 Thale cress cytosol 45.99 46.13
AT4G01740.1 Thale cress cytosol 45.23 45.86
AT1G58037.1 Thale cress cytosol 23.3 44.9
AT2G43220.1 Thale cress peroxisome 33.89 41.64
AT3G27510.1 Thale cress cytosol 27.38 41.14
AT3G06990.1 Thale cress nucleus 33.43 41.0
AT5G22355.1 Thale cress cytosol 40.39 40.21
AT4G16015.1 Thale cress cytosol 32.53 40.19
AT5G45730.1 Thale cress nucleus 33.89 40.0
AT5G40320.1 Thale cress nucleus 35.55 39.56
AT4G11390.2 Thale cress cytosol 32.68 39.56
AT3G07000.1 Thale cress cytosol 34.34 39.55
AT4G14980.1 Thale cress cytosol 32.22 39.08
AT3G46810.1 Thale cress cytosol 40.24 38.78
AT3G27473.1 Thale cress cytosol 38.43 38.37
AT2G04680.1 Thale cress cytosol 38.12 38.36
AT5G44770.1 Thale cress cytosol, nucleus, peroxisome 31.32 38.26
AT4G01350.1 Thale cress cytosol 37.37 37.88
AT5G37620.1 Thale cress cytosol 37.37 37.88
AT5G54050.1 Thale cress nucleus 32.98 37.59
AT3G27480.1 Thale cress cytosol, nucleus, peroxisome 34.34 37.58
AT2G04500.1 Thale cress cytosol 27.99 37.37
AT5G59940.1 Thale cress cytosol 36.76 37.33
AT3G46800.1 Thale cress cytosol 38.43 37.24
AT5G59930.1 Thale cress cytosol, nucleus, plasma membrane 36.91 37.2
AT3G28650.1 Thale cress cytosol 37.22 36.99
AT2G19660.2 Thale cress nucleus 38.43 36.81
AT2G19650.1 Thale cress cytosol 37.97 36.8
AT3G48400.1 Thale cress cytosol 34.34 36.67
AT4G13992.1 Thale cress mitochondrion 35.55 36.6
AT3G27500.1 Thale cress cytosol 38.28 36.56
AT5G54020.2 Thale cress nucleus 32.38 36.39
AT5G54030.1 Thale cress cytosol 22.69 35.8
AT3G27490.1 Thale cress cytosol 36.76 35.63
AT5G42840.1 Thale cress cytosol 36.16 35.62
AT5G54040.1 Thale cress cytosol 32.07 35.57
AT3G45530.1 Thale cress cytosol 37.22 35.55
AT5G59920.1 Thale cress cytosol 38.12 35.49
AT3G45840.1 Thale cress mitochondrion, nucleus, peroxisome, vacuole 31.01 34.69
AT5G29624.1 Thale cress cytosol 24.81 33.61
AT4G02180.1 Thale cress cytosol 49.62 33.16
KRG95394 Soybean nucleus 21.79 25.4
KRH67075 Soybean nucleus 21.48 24.91
Protein Annotations
MapMan:35.2EntrezGene:823505ProteinID:AEE77839.1ArrayExpress:AT3G43890EnsemblPlantsGene:AT3G43890RefSeq:AT3G43890
TAIR:AT3G43890RefSeq:AT3G43890-TAIR-GEnsemblPlants:AT3G43890.1TAIR:AT3G43890.1ProteinID:CAB88117.1InterPro:DC1
GO:GO:0003674GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0007154
GO:GO:0007165GO:GO:0008150GO:GO:0009987GO:GO:0035556GO:GO:0046872RefSeq:NP_189975.1
PFAM:PF03107UniProt:Q9LXX0SMART:SM00249SUPFAM:SSF57889UniParc:UPI00000A66BEInterPro:Znf_PHD
SEG:seg:::::
Description
Cysteine/Histidine-rich C1 domain family protein [Source:UniProtKB/TrEMBL;Acc:Q9LXX0]
Coordinates
chr3:-:15741297..15743612
Molecular Weight (calculated)
76535.9 Da
IEP (calculated)
6.815
GRAVY (calculated)
-0.414
Length
661 amino acids
Sequence
(BLAST)
001: MDDLKVNLPF HEHPLTPVKM ESKCDWCGIK FIHISDGYQC DSCFTPLFHK TCANDKNIAH PSQACGIILY HTVNFDSGKW RCAKCGEKIY DSLFFVCNDC
101: VLKPRRKGSR FGGSSYFHFN CAKYPPSEVI DVPQHHDHKL KLEMVISSFT CAACGKDGDG YSYKCQECNL TFHVNCEKYP AEVTHFSHFL HPLKLFKGEP
201: PAYTDGKCRL CGEKLANFEV FYHCSACNFS LDLQCVFHPP KQNPHDLNIH DHPLTLMPKS ISFTCTTCGL NGDRSPYVCL PCDFTSHNDC SGYPWVININ
301: RHDHRVSRTS LIGVVNSVCG ICRKKMDWSC GGYSCQKCSS YVFHTKCATR EDVWDGKEMK DEPEEEEAIQ PFTIIDENTI KHVSHKEHNL RLDKSGIFIE
401: ERICEACVYP IYHHSFYSCM SCSFILHESC AYLPLWKRHV VSNERHEYKY WDYFIRCSAC RLLSNGFRYE TTQTSLDLRC ASTTEPFFHK THPHPLFYTS
501: PQGICSICKK DHLHVLRCVE DGCEYIMDYK CALLPYEVKH SVDQHFLSLC YGEENASGKH WCDICEKEMD PKTWFYTSKD CELTLHTDCV LGDFRGLKPE
601: SEESMYIDDF EMYVKVVRNN SMSRPLCKQC KSRCIFPVIL ETWNESCLRN EYYCSEACFY S
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.