Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G54030.1 | Thale cress | cytosol | 52.01 | 73.99 |
| Bra040595.1-P | Field mustard | cytosol | 50.17 | 69.7 |
| AT5G54050.1 | Thale cress | nucleus | 66.44 | 68.28 |
| AT5G29624.1 | Thale cress | cytosol | 55.87 | 68.24 |
| CDY51540 | Canola | nucleus | 55.54 | 64.52 |
| CDY28703 | Canola | cytosol | 53.86 | 64.46 |
| AT5G54020.2 | Thale cress | nucleus | 63.09 | 63.95 |
| AT2G04500.1 | Thale cress | cytosol | 52.85 | 63.64 |
| AT4G14980.1 | Thale cress | cytosol | 58.05 | 63.49 |
| AT5G44770.1 | Thale cress | cytosol, nucleus, peroxisome | 57.05 | 62.85 |
| AT1G58037.1 | Thale cress | cytosol | 29.03 | 50.44 |
| AT5G45730.1 | Thale cress | nucleus | 45.47 | 48.39 |
| AT3G06990.1 | Thale cress | nucleus | 42.79 | 47.31 |
| AT3G07000.1 | Thale cress | cytosol | 43.29 | 44.95 |
| AT4G01925.1 | Thale cress | cytosol | 19.8 | 42.14 |
| AT2G43220.1 | Thale cress | peroxisome | 37.25 | 41.26 |
| AT4G11540.1 | Thale cress | cytosol | 34.56 | 39.24 |
| AT3G27510.1 | Thale cress | cytosol | 28.36 | 38.41 |
| AT5G40320.1 | Thale cress | nucleus | 37.42 | 37.54 |
| AT4G16015.1 | Thale cress | cytosol | 33.39 | 37.2 |
| AT5G22355.1 | Thale cress | cytosol | 39.93 | 35.84 |
| AT4G01930.1 | Thale cress | cytosol | 39.09 | 35.74 |
| AT4G11390.2 | Thale cress | cytosol | 32.55 | 35.53 |
| AT4G01920.1 | Thale cress | cytosol | 38.59 | 34.95 |
| AT4G11550.1 | Thale cress | cytosol | 39.09 | 34.88 |
| AT4G01910.1 | Thale cress | cytosol | 37.92 | 34.72 |
| AT4G01740.1 | Thale cress | cytosol | 37.42 | 34.2 |
| AT3G46800.1 | Thale cress | cytosol | 38.93 | 34.02 |
| AT4G02190.1 | Thale cress | cytosol | 37.58 | 33.99 |
| AT1G65180.1 | Thale cress | nucleus | 37.08 | 33.84 |
| AT4G01760.1 | Thale cress | cytosol | 37.42 | 33.43 |
| AT5G59930.1 | Thale cress | cytosol, nucleus, plasma membrane | 36.74 | 33.38 |
| AT2G19660.2 | Thale cress | nucleus | 38.26 | 33.04 |
| AT3G27480.1 | Thale cress | cytosol, nucleus, peroxisome | 33.22 | 32.78 |
| AT3G28650.1 | Thale cress | cytosol | 36.24 | 32.48 |
| AT3G46810.1 | Thale cress | cytosol | 37.25 | 32.36 |
| AT3G27473.1 | Thale cress | cytosol | 35.91 | 32.33 |
| AT3G48400.1 | Thale cress | cytosol | 33.56 | 32.31 |
| AT5G59940.1 | Thale cress | cytosol | 35.07 | 32.1 |
| AT3G43890.1 | Thale cress | cytosol | 35.57 | 32.07 |
| AT5G42840.1 | Thale cress | cytosol | 35.91 | 31.89 |
| AT2G04680.1 | Thale cress | cytosol | 34.9 | 31.66 |
| AT4G01350.1 | Thale cress | cytosol | 34.56 | 31.6 |
| AT1G69150.1 | Thale cress | cytosol | 27.35 | 31.53 |
| AT2G19650.1 | Thale cress | cytosol | 35.91 | 31.38 |
| AT3G27500.1 | Thale cress | cytosol | 36.24 | 31.21 |
| AT4G13992.1 | Thale cress | mitochondrion | 33.56 | 31.15 |
| AT3G45530.1 | Thale cress | cytosol | 35.91 | 30.92 |
| AT3G27490.1 | Thale cress | cytosol | 35.23 | 30.79 |
| AT5G37620.1 | Thale cress | cytosol | 33.56 | 30.67 |
| AT5G59920.1 | Thale cress | cytosol | 36.41 | 30.56 |
| AT3G45840.1 | Thale cress | mitochondrion, nucleus, peroxisome, vacuole | 29.7 | 29.95 |
| KRG95394 | Soybean | nucleus | 22.15 | 23.28 |
| AT4G02180.1 | Thale cress | cytosol | 37.58 | 22.65 |
| KRH67075 | Soybean | nucleus | 21.64 | 22.63 |
Protein Annotations
| Gene3D:3.30.60.20 | MapMan:35.2 | EntrezGene:835487 | ProteinID:AED96441.1 | ArrayExpress:AT5G54040 | EnsemblPlantsGene:AT5G54040 |
| RefSeq:AT5G54040 | TAIR:AT5G54040 | RefSeq:AT5G54040-TAIR-G | EnsemblPlants:AT5G54040.1 | TAIR:AT5G54040.1 | Unigene:At.65675 |
| ProteinID:BAB10734.1 | InterPro:DC1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0035556 |
| GO:GO:0046872 | RefSeq:NP_200215.1 | PFAM:PF03107 | PO:PO:0009005 | PO:PO:0009047 | PO:PO:0020100 |
| PANTHER:PTHR32410 | UniProt:Q9FN23 | SUPFAM:SSF57889 | UniParc:UPI00000A0E33 | SEG:seg | : |
Description
CHP-rich zinc finger protein-like [Source:UniProtKB/TrEMBL;Acc:Q9FN23]
Coordinates
chr5:-:21928847..21930637
Molecular Weight (calculated)
68841.6 Da
IEP (calculated)
7.119
GRAVY (calculated)
-0.274
Length
596 amino acids
Sequence
(BLAST)
(BLAST)
001: MTPDDFQLAT MPKLTVPFHD HPMSSSYCIF LESCSLCSFS KNSSWLRRSV TCISYECTDC GLTLHKECVD HLFLNRPFLC NHVLKIYRNT FAWPDPDRKD
101: DLSCHFCRRK LTSFFARLRN LPSFFARCTI CNINVDKKCL MALGPPLAIF EPKHHEHSLT LLLRLVTFTC NACGVVDDRN PYVCLECNLM VHKECVQNLP
201: RVISINRHDH RISHTFHLGQ GEGDWECGVC RKTINWVYGG YKCSRCPSYA VHSRCATRYE VWDGLELEDV PEEEEEIEDP FKVINEKGDI IHFSHEEHVL
301: RLDEIYVTDD ANMRCRCCVL AINGDPCYRC VECDFILHKA CANLPRKMRH LLHKHKLTLS STGNRFLRCK ACDIKTNGFI YECLHEGCKS ISFTYDVRCS
401: SVSEPFHHDL HQHPLYFTLE KTNKCHACKR KIDWNPLNCT VCDDYSLCTR CAALPRKVKH RCDDHYLSLC QGVGSASGDL WCDICETKTD PSVFYYTCDD
501: CGLSLHIDCV LGDCYYTKVG CPGPRMEVHP NNGATRPICT KCELRCKFPF FIKGTEEDLG IWYCSKDLCP KEFNFAVSPY RFALDIGLRD WDLRVF
101: DLSCHFCRRK LTSFFARLRN LPSFFARCTI CNINVDKKCL MALGPPLAIF EPKHHEHSLT LLLRLVTFTC NACGVVDDRN PYVCLECNLM VHKECVQNLP
201: RVISINRHDH RISHTFHLGQ GEGDWECGVC RKTINWVYGG YKCSRCPSYA VHSRCATRYE VWDGLELEDV PEEEEEIEDP FKVINEKGDI IHFSHEEHVL
301: RLDEIYVTDD ANMRCRCCVL AINGDPCYRC VECDFILHKA CANLPRKMRH LLHKHKLTLS STGNRFLRCK ACDIKTNGFI YECLHEGCKS ISFTYDVRCS
401: SVSEPFHHDL HQHPLYFTLE KTNKCHACKR KIDWNPLNCT VCDDYSLCTR CAALPRKVKH RCDDHYLSLC QGVGSASGDL WCDICETKTD PSVFYYTCDD
501: CGLSLHIDCV LGDCYYTKVG CPGPRMEVHP NNGATRPICT KCELRCKFPF FIKGTEEDLG IWYCSKDLCP KEFNFAVSPY RFALDIGLRD WDLRVF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.