Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- cytosol 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra040595.1-P | Field mustard | cytosol | 53.97 | 68.07 |
| CDY28703 | Canola | cytosol | 59.52 | 64.66 |
| CDY51540 | Canola | nucleus | 60.81 | 64.13 |
| AT4G14980.1 | Thale cress | cytosol | 61.55 | 61.1 |
| AT2G04500.1 | Thale cress | cytosol | 55.64 | 60.81 |
| AT5G54030.1 | Thale cress | cytosol | 45.84 | 59.19 |
| AT5G54050.1 | Thale cress | nucleus | 62.11 | 57.93 |
| AT5G54040.1 | Thale cress | cytosol | 62.85 | 57.05 |
| AT5G54020.2 | Thale cress | nucleus | 61.74 | 56.8 |
| AT5G29624.1 | Thale cress | cytosol | 50.28 | 55.74 |
| AT5G45730.1 | Thale cress | nucleus | 51.76 | 50.0 |
| AT1G58037.1 | Thale cress | cytosol | 31.05 | 48.98 |
| AT3G06990.1 | Thale cress | nucleus | 46.77 | 46.94 |
| AT3G07000.1 | Thale cress | cytosol | 48.06 | 45.3 |
| AT4G01925.1 | Thale cress | cytosol | 21.07 | 40.71 |
| AT3G27510.1 | Thale cress | cytosol | 31.98 | 39.32 |
| AT2G43220.1 | Thale cress | peroxisome | 38.63 | 38.85 |
| AT4G11540.1 | Thale cress | cytosol | 37.15 | 38.29 |
| AT5G40320.1 | Thale cress | nucleus | 41.04 | 37.37 |
| AT4G16015.1 | Thale cress | cytosol | 36.41 | 36.82 |
| AT4G11550.1 | Thale cress | cytosol | 43.81 | 35.48 |
| AT4G01910.1 | Thale cress | cytosol | 42.51 | 35.33 |
| AT4G01740.1 | Thale cress | cytosol | 42.33 | 35.12 |
| AT4G01930.1 | Thale cress | cytosol | 42.14 | 34.97 |
| AT4G01920.1 | Thale cress | cytosol | 42.51 | 34.95 |
| AT5G22355.1 | Thale cress | cytosol | 42.88 | 34.94 |
| AT4G11390.2 | Thale cress | cytosol | 35.12 | 34.8 |
| AT3G46800.1 | Thale cress | cytosol | 43.25 | 34.31 |
| AT1G65180.1 | Thale cress | nucleus | 41.22 | 34.15 |
| AT3G46810.1 | Thale cress | cytosol | 42.14 | 33.24 |
| AT4G01760.1 | Thale cress | cytosol | 40.48 | 32.83 |
| AT3G27480.1 | Thale cress | cytosol, nucleus, peroxisome | 36.6 | 32.78 |
| AT3G27473.1 | Thale cress | cytosol | 40.11 | 32.78 |
| AT4G02190.1 | Thale cress | cytosol | 39.93 | 32.78 |
| AT3G28650.1 | Thale cress | cytosol | 39.37 | 32.03 |
| AT3G48400.1 | Thale cress | cytosol | 36.6 | 31.99 |
| AT2G04680.1 | Thale cress | cytosol | 38.63 | 31.81 |
| AT5G59930.1 | Thale cress | cytosol, nucleus, plasma membrane | 38.45 | 31.71 |
| AT2G19660.2 | Thale cress | nucleus | 40.3 | 31.59 |
| AT3G43890.1 | Thale cress | cytosol | 38.26 | 31.32 |
| AT5G37620.1 | Thale cress | cytosol | 37.52 | 31.14 |
| AT3G27490.1 | Thale cress | cytosol | 39.19 | 31.09 |
| AT5G59940.1 | Thale cress | cytosol | 37.34 | 31.03 |
| AT4G01350.1 | Thale cress | cytosol | 37.34 | 30.98 |
| AT1G69150.1 | Thale cress | cytosol | 29.57 | 30.95 |
| AT2G19650.1 | Thale cress | cytosol | 38.82 | 30.79 |
| AT5G42840.1 | Thale cress | cytosol | 38.08 | 30.7 |
| AT4G13992.1 | Thale cress | mitochondrion | 36.41 | 30.69 |
| AT3G45530.1 | Thale cress | cytosol | 39.19 | 30.64 |
| AT3G27500.1 | Thale cress | cytosol | 38.63 | 30.2 |
| AT5G59920.1 | Thale cress | cytosol | 39.19 | 29.86 |
| AT3G45840.1 | Thale cress | mitochondrion, nucleus, peroxisome, vacuole | 31.61 | 28.93 |
| AT4G02180.1 | Thale cress | cytosol | 41.77 | 22.85 |
| KRG95394 | Soybean | nucleus | 23.84 | 22.75 |
| KRH67075 | Soybean | nucleus | 23.11 | 21.93 |
Protein Annotations
| MapMan:35.2 | EntrezGene:834506 | ProteinID:AAC79144.1 | ProteinID:AED95159.1 | ArrayExpress:AT5G44770 | EnsemblPlantsGene:AT5G44770 |
| RefSeq:AT5G44770 | TAIR:AT5G44770 | RefSeq:AT5G44770-TAIR-G | EnsemblPlants:AT5G44770.1 | TAIR:AT5G44770.1 | Unigene:At.55364 |
| ProteinID:BAB08830.1 | InterPro:DC1 | EMBL:DQ056707 | RefSeq:NP_199290.1 | UniProt:O48583 | PFAM:PF03107 |
| ScanProsite:PS01359 | PANTHER:PTHR32410 | SMART:SM00249 | SUPFAM:SSF57889 | UniParc:UPI00000A9BDE | InterPro:Zinc_finger_PHD-type_CS |
| InterPro:Znf_PHD | SEG:seg | : | : | : | : |
Description
CHP-rich zinc finger protein-like [Source:UniProtKB/TrEMBL;Acc:O48583]
Coordinates
chr5:+:18065012..18066696
Molecular Weight (calculated)
61728.1 Da
IEP (calculated)
7.263
GRAVY (calculated)
-0.325
Length
541 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKLMLPFHE HPMTISNLYN HACDFCPGRP KPGTIFFCEK CDLDLHKGCA GKFLNNSSRC NHSLKIFQGR FGQFGEDDDY QCHYCQQNVG FHFARCTICN
101: ISIDEKCLRN PPPLTIFQPK HHKHSLFLLG RLVAFTCNAC GVEGDRNPYI CIECNLMLHK ECTDLPRVIS INRHEHRISH TFHLGKGEGV WECGVCRKTI
201: DCVYGAFICS RCPSSYAVHS RCATRKEVWD GIELEDVPEE DEELEDPFKV INEKGDIVHF SHEEHVLRLD VNYVHDNDTM CCGGCILPIN DDPCYKCVEC
301: DFCLHKGCAS LPRKKAHFLH NHKISLRAHK DDVYVDKCGA CKTYSNGFKY ECHDKSSCRG NIKYDIRCSS ISEPFHHDDL HPHPLYWTLE ETKQCKACGT
401: EILKPLSCLV CEYALCIRCA TLPKKVKHRC DDHFLSLCHD AGNSSGDLWC DICETKTDPS VCYYTCDKCG VSLHINCVLG DLYYTKVGLV YPGLEVLPNN
501: GATRPFCNSC KVRCKFSFLM KQTLGDLVRY FCSIRCIPRA R
101: ISIDEKCLRN PPPLTIFQPK HHKHSLFLLG RLVAFTCNAC GVEGDRNPYI CIECNLMLHK ECTDLPRVIS INRHEHRISH TFHLGKGEGV WECGVCRKTI
201: DCVYGAFICS RCPSSYAVHS RCATRKEVWD GIELEDVPEE DEELEDPFKV INEKGDIVHF SHEEHVLRLD VNYVHDNDTM CCGGCILPIN DDPCYKCVEC
301: DFCLHKGCAS LPRKKAHFLH NHKISLRAHK DDVYVDKCGA CKTYSNGFKY ECHDKSSCRG NIKYDIRCSS ISEPFHHDDL HPHPLYWTLE ETKQCKACGT
401: EILKPLSCLV CEYALCIRCA TLPKKVKHRC DDHFLSLCHD AGNSSGDLWC DICETKTDPS VCYYTCDKCG VSLHINCVLG DLYYTKVGLV YPGLEVLPNN
501: GATRPFCNSC KVRCKFSFLM KQTLGDLVRY FCSIRCIPRA R
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.