Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra040595.1-P | Field mustard | cytosol | 50.34 | 69.0 |
| AT5G54050.1 | Thale cress | nucleus | 67.18 | 68.1 |
| AT5G54030.1 | Thale cress | cytosol | 46.94 | 65.87 |
| AT5G29624.1 | Thale cress | cytosol | 52.72 | 63.52 |
| CDY51540 | Canola | nucleus | 55.27 | 63.35 |
| AT5G54040.1 | Thale cress | cytosol | 63.95 | 63.09 |
| CDY28703 | Canola | cytosol | 53.23 | 62.85 |
| AT4G14980.1 | Thale cress | cytosol | 57.65 | 62.2 |
| AT5G44770.1 | Thale cress | cytosol, nucleus, peroxisome | 56.8 | 61.74 |
| AT2G04500.1 | Thale cress | cytosol | 51.36 | 61.01 |
| AT1G58037.1 | Thale cress | cytosol | 29.08 | 49.85 |
| AT5G45730.1 | Thale cress | nucleus | 45.24 | 47.5 |
| AT3G06990.1 | Thale cress | nucleus | 42.52 | 46.38 |
| AT3G07000.1 | Thale cress | cytosol | 44.39 | 45.47 |
| AT4G01925.1 | Thale cress | cytosol | 19.39 | 40.71 |
| AT2G43220.1 | Thale cress | peroxisome | 35.71 | 39.03 |
| AT3G27510.1 | Thale cress | cytosol | 29.08 | 38.86 |
| AT4G11540.1 | Thale cress | cytosol | 34.01 | 38.1 |
| AT4G16015.1 | Thale cress | cytosol | 33.84 | 37.2 |
| AT5G40320.1 | Thale cress | nucleus | 37.41 | 37.04 |
| AT5G22355.1 | Thale cress | cytosol | 41.67 | 36.9 |
| AT4G01910.1 | Thale cress | cytosol | 38.61 | 34.87 |
| AT4G01930.1 | Thale cress | cytosol | 37.93 | 34.2 |
| AT4G11390.2 | Thale cress | cytosol | 31.63 | 34.07 |
| AT4G01920.1 | Thale cress | cytosol | 37.93 | 33.89 |
| AT3G46800.1 | Thale cress | cytosol | 39.12 | 33.72 |
| AT3G48400.1 | Thale cress | cytosol | 35.37 | 33.6 |
| AT1G65180.1 | Thale cress | nucleus | 37.24 | 33.54 |
| AT4G11550.1 | Thale cress | cytosol | 37.76 | 33.23 |
| AT2G19660.2 | Thale cress | nucleus | 38.78 | 33.04 |
| AT2G19650.1 | Thale cress | cytosol | 38.1 | 32.84 |
| AT4G01740.1 | Thale cress | cytosol | 36.39 | 32.82 |
| AT3G46810.1 | Thale cress | cytosol | 38.27 | 32.8 |
| AT4G02190.1 | Thale cress | cytosol | 36.73 | 32.78 |
| AT5G59930.1 | Thale cress | cytosol, nucleus, plasma membrane | 36.39 | 32.62 |
| AT4G01350.1 | Thale cress | cytosol | 36.05 | 32.52 |
| AT4G01760.1 | Thale cress | cytosol | 36.73 | 32.38 |
| AT3G43890.1 | Thale cress | cytosol | 36.39 | 32.38 |
| AT3G27473.1 | Thale cress | cytosol | 36.22 | 32.18 |
| AT3G27480.1 | Thale cress | cytosol, nucleus, peroxisome | 32.99 | 32.12 |
| AT2G04680.1 | Thale cress | cytosol | 35.71 | 31.96 |
| AT5G59940.1 | Thale cress | cytosol | 35.37 | 31.95 |
| AT4G13992.1 | Thale cress | mitochondrion | 34.69 | 31.78 |
| AT3G28650.1 | Thale cress | cytosol | 35.71 | 31.58 |
| AT5G37620.1 | Thale cress | cytosol | 34.69 | 31.29 |
| AT1G69150.1 | Thale cress | cytosol | 27.21 | 30.95 |
| AT5G42840.1 | Thale cress | cytosol | 35.2 | 30.85 |
| AT5G59920.1 | Thale cress | cytosol | 36.9 | 30.56 |
| AT3G27490.1 | Thale cress | cytosol | 35.37 | 30.5 |
| AT3G27500.1 | Thale cress | cytosol | 35.88 | 30.49 |
| AT3G45840.1 | Thale cress | mitochondrion, nucleus, peroxisome, vacuole | 30.44 | 30.29 |
| AT3G45530.1 | Thale cress | cytosol | 35.2 | 29.91 |
| KRG95394 | Soybean | nucleus | 22.79 | 23.63 |
| KRH67075 | Soybean | nucleus | 21.94 | 22.63 |
| AT4G02180.1 | Thale cress | cytosol | 37.76 | 22.45 |
Protein Annotations
| Gene3D:3.30.60.20 | MapMan:35.2 | EntrezGene:835485 | UniProt:A0A1P8BFV2 | ProteinID:AED96439.2 | ProteinID:ANM70464.1 |
| ArrayExpress:AT5G54020 | EnsemblPlantsGene:AT5G54020 | RefSeq:AT5G54020 | TAIR:AT5G54020 | RefSeq:AT5G54020-TAIR-G | EnsemblPlants:AT5G54020.2 |
| InterPro:DC1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0035556 | InterPro:IPR002219 | RefSeq:NP_001332072.1 | RefSeq:NP_200213.2 |
| InterPro:PE/DAG-bd | PFAM:PF03107 | PANTHER:PTHR32410 | SMART:SM00109 | SUPFAM:SSF57889 | UniParc:UPI00084933A2 |
| SEG:seg | : | : | : | : | : |
Description
Cysteine/Histidine-rich C1 domain family protein [Source:TAIR;Acc:AT5G54020]
Coordinates
chr5:-:21921666..21923632
Molecular Weight (calculated)
68132.3 Da
IEP (calculated)
6.833
GRAVY (calculated)
-0.379
Length
588 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSLSIHKEQ LSLEREKTET QLMLCFFFNL KAMSSTDHEE VTLPFHHHPL SCGTFESYTF RSILSIPKLR NGIYNCYHCK ECSLTFHKEW ADSFFSQQFI
101: CNHVLKIFRR AKTPLVDSTD DHFCHFCRSK LKLKHFRCTI CNISVGRECV KDPPPLTIYQ PKHHKHSLTL LLRLVTFTCN ACGVEDDRNP YVCLECNLMV
201: HKYCIEKLPR VISINRHDHR INHTFHLGQG EGDKECGVCR KKINWAYGGY ECSRCPSYAV HSRCATRREV WDGLELEDVP EEEEEIEDPF KVVNEKGDIV
301: HFCHEEHVLR LDENYVTDNV NMRCRCCVLA IDGDPCYRCL ECDFILHEKC ANLPRKMRHL LHNHKLSLEV SFTRFRRSDN FFYTCIACQT HTDGFIYACH
401: DGLCRYLVKS IKYDVRCSSV SEPFHHDLHQ HPLYFTLQSS RQCQACGTKI DHDPLSCTVC DDYSLCMRCT TLPRKVKHRC DDHFLSLCQG SSVNDSGDLW
501: CDICETKTDP SVCYYTCDEC GLSLHIDCVL GDLYYLKLGI PEPDVEICPN NEATRPLCSG CKVRCKNPFF IRSTEEEPAS HACSIDCS
101: CNHVLKIFRR AKTPLVDSTD DHFCHFCRSK LKLKHFRCTI CNISVGRECV KDPPPLTIYQ PKHHKHSLTL LLRLVTFTCN ACGVEDDRNP YVCLECNLMV
201: HKYCIEKLPR VISINRHDHR INHTFHLGQG EGDKECGVCR KKINWAYGGY ECSRCPSYAV HSRCATRREV WDGLELEDVP EEEEEIEDPF KVVNEKGDIV
301: HFCHEEHVLR LDENYVTDNV NMRCRCCVLA IDGDPCYRCL ECDFILHEKC ANLPRKMRHL LHNHKLSLEV SFTRFRRSDN FFYTCIACQT HTDGFIYACH
401: DGLCRYLVKS IKYDVRCSSV SEPFHHDLHQ HPLYFTLQSS RQCQACGTKI DHDPLSCTVC DDYSLCMRCT TLPRKVKHRC DDHFLSLCQG SSVNDSGDLW
501: CDICETKTDP SVCYYTCDEC GLSLHIDCVL GDLYYLKLGI PEPDVEICPN NEATRPLCSG CKVRCKNPFF IRSTEEEPAS HACSIDCS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.